<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21847

Description Uncharacterized protein
SequenceMADLGFPKIPSKSPAPSTPSTHTLDFSQSPTPAPAPTFQNGDFQSTATNTANKLLSFKDREQRAVAEMLSRFRNLVSLSSMKDNDGASATKEVAAGQAFALEVESVALVRAAEDLLQLSRELKEMWLFGPLRGIGEGEGGETIDEDSKKVGEIAEALLRKQVGAPTEGGGS
Length171
PositionHead
OrganismPhialophora cf. hyalina BP 5553
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Helotiales> Pleuroascaceae> Venustampulla.
Aromaticity0.05
Grand average of hydropathy-0.396
Instability index44.25
Isoelectric point4.90
Molecular weight18122.07
Publications
PubMed=30018880

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21847
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.67|      13|      17|       4|      19|       1
---------------------------------------------------------------------------
    4-   16 (25.79/17.26)	LGFPKIPSKSPAP
   24-   36 (25.88/ 9.18)	LDFSQSPTPAPAP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21847 with Med22 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DLGFPKIPSKSPAPSTPSTHTLDFSQSPTPAPAPTFQNGDFQS
3
45










Molecular Recognition Features






MoRF SequenceStartStop




1) EDSKKVGEIAEALLRKQVGAPT
2) LFGPLRGI
3) RFRNLVSL
145
127
71
166
134
78