<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21834

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMDGNDQDQLMEDLFGNENHHVTVAITPSPPAKGLPQRLDLLAATNCCQKIAWSRFGCIAAVSEAGKGVNLYTYMRDPKDGSWNIANPIPLWPPVAENRRVAHITWSHMGNDLTVVDTSGRILIYSTGFALGQMMLVRPTNNDPDDELSSLVGLHWLPVFPHTQKSGIFWNARRQGDDWKFFMSHHISPGPYNPLEGKSALVGLTRSGVLRLLFQQRDGKWQDTNVEIEGPAIAVESSFTHASFAPNTDKSLLLAAHHVTGALRLYSISFNWNLTDTKDPQAKSQPGMRPVLTVTSLVEVASCFPADLSSGAQGEDGASNVDNSLSYQLSYLELIPHAPEQGSKEPTEQTVMAVFTVTPSPSAMMDSMQQYQQISSTICRWELKTGLQDKVAPCFDLLSVKKKTCSAIASRNRARLQRLADISLHSAVLNVVSIRSHTMFAFTMSDGSIQFRYRDTMEIVTADDEHDEVHTMHQSGFAFPNIDTYLHTTFSPSTCVVAMLKLDGTVKVEKIQYLPTSLNDIKEDDPRYGSVTAVLALQHSSASMQYKSTDDLLSILPTDLSAALTHGLLTKACKFLTVNFDFVSDDNQKQIPGLYRHHLLFKCLSIQSTLGSSDKKGPRKLSARLAWITINLRLISLCISMNLRSNENLRAEMAMSLVGLVKWSLDICVYLLQELFALHDKIRHATRQGDLDKEKDLAWIQEHMLKEHSPAILVLLCSIPRILLRMIFRPLRHGMIHSTNGLKTSLQYEHKMAFNKLLQIYQATPISILPLETYLMDVDSLVKTAYRNAGISDAKREEYEREMFLTATIPTILAPCITEMLTSKLHTLATHVDQGKIYLHDISWLGLTDDGKTKRWHKNHLVDVVRKLPISKDSRFRVCPRCASVVEDIIPGMQSGGGGMGQMPWVGQSQKTCICYNSWAGVGPRGLKRKVEGGSGAAGGL
Length940
PositionTail
OrganismVenturia inaequalis (Apple scab fungus)
KingdomFungi
Lineage
Aromaticity0.07
Grand average of hydropathy-0.186
Instability index36.45
Isoelectric point7.40
Molecular weight104524.81
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21834
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.26|      10|      88|     298|     309|       3
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  298-  309 (14.87/15.33)	EVASCFpaDLSS
  389-  398 (20.39/12.07)	KVAPCF..DLLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.13|      45|     512|     171|     224|       5
---------------------------------------------------------------------------
  171-  224 (72.27/68.62)	ARRQGD.....DWKFFMSHHispgpynpLEGKSA.....LVGLTRSgVLRLLFQQ.RDGKWQDTN
  684-  739 (69.87/43.52)	ATRQGDldkekDLAWIQEHM........LKEHSPailvlLCSIPRI.LLRMIFRPlRHGMIHSTN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.42|      16|     353|     258|     273|       6
---------------------------------------------------------------------------
  258-  273 (29.16/17.29)	VTGALRLYSISFNWNL
  627-  642 (26.25/14.88)	ITINLRLISLCISMNL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21834 with Med16 domain of Kingdom Fungi
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