<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21830

Description Mediator of RNA polymerase II transcription subunit 11
SequenceMDSSEKPVDNGTMKDDESQATTAAINIKELSAISKQIPIALQAAGAAISVLTNNPAPGLLSSKSKKAREDAFSEQDANFTRALYKINEDLSWQVDVLLEAGLLIEKTPKVKPGREEVTNGGLGTLDVGYLNSRAKDVGQVKEGELIAEARRLAEKVVNGKEGVMEGVVAMEE
Length172
PositionHead
OrganismVenturia inaequalis (Apple scab fungus)
KingdomFungi
Lineage
Aromaticity0.03
Grand average of hydropathy-0.352
Instability index27.18
Isoelectric point4.84
Molecular weight18353.53
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21830
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     126.49|      40|      40|      86|     125|       1
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   58-   84 (22.44/10.34)	................GLLSSK....SKKAREDafSEQDANFTRALY
   86-  125 (65.63/42.41)	INEDLSWQVDV.LLEAGLLIEK....TPKVKPG..REEVTNGGLGTL
  127-  166 (38.42/22.21)	VGYLNSRAKDVgQVKEGELIAEarrlAEKVVNG..KEGVMEG.....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21830 with Med11 domain of Kingdom Fungi
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