<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21829

Description Uncharacterized protein
SequenceMSKPKKSDSAAFTITSDKDEDDHKAIEALRASFTRLHAGIDIFSQRDFLIQDPNAIENAEGTGMPSWPAIYHATNGIKTNIINTARLITKNETFLSEAHIHPNTTWPIERTHLIDELLRRQPDFETQAWMNEALALGQGQDEGEGEAEMTTKQWEELWEFADYQHNVKGREIYAGQEVGDEDGEEDGEEEEEEEVDEVEQVVVGEKGKGPVVSSGASMSLEDMLRYTHSGGTLTVGGPPPTG
Length242
PositionHead
OrganismVenturia inaequalis (Apple scab fungus)
KingdomFungi
Lineage
Aromaticity0.07
Grand average of hydropathy-0.754
Instability index49.78
Isoelectric point4.42
Molecular weight26857.03
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21829
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.05|      35|      37|     109|     144|       1
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  109-  144 (58.41/38.40)	ERTHLIDELLRRQPDFETQAWMNEALAlGQ..GQDEGE
  148-  184 (60.64/35.84)	EMTTKQWEELWEFADYQHNVKGREIYA.GQevGDEDGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.99|      32|      36|      37|      68|       2
---------------------------------------------------------------------------
   10-   34 (32.59/18.20)	.A..AF..TITSDKDE..DDHKAIEALRA....SFT
   37-   68 (58.07/37.53)	HA..GI..DIFSQRDFLIQDPNAIENAEGTGMPSWP
   72-  107 (42.34/25.60)	HAtnGIktNIINTARLITKNETFLSEAHIHPNTTWP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21829 with Med8 domain of Kingdom Fungi
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