<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21823

Description F-box-like/WD repeat-containing protein TBL1XR1
SequenceMNFTSEELNYLIYRYLQESGFHHSCYTFGIESHIHRSNINGSSVPPGALISMVQKGMLYYYVDMTLKDEKNGENQNNHNNLENISLIDSIGKMSELSSGNLSYGVATNAKNDQQLTPDSQKKLTKDSKREENSDQRRSSESDVHSNSIHNSEIFAIKWHPNKELIATGSSDGTAKISQPNEVEATVLEHYPNEIDKRQPEASNGNCGISDRYAVTSIVWKPDGSQLLTACADGKGRIWQLDGKLVATLSNHTAPIFVCRWNIDGSLIAMGSADMRVTIWDSSSYEMKQCCDHHKGPVTDIDWQNVSIFATCSTDRSVAVCEVGSEKPIKSYEGHTSEINVVRWDPSSNLLASGSDDCTVKVWNLKQDKCVHDFRGHVRNIYAIKWCPVKRVVSCSCLASASADRTIRIWDVDRGICLYTLNRHQSPVYSLAFNSDGRLLASGSYDTAVNIWSLENGLLVRTVMIDGPVSDIDWHKDNRIVAVSGNGSSYVIDMRKNY
Length497
PositionTail
OrganismTrichoplax sp. H2
KingdomMetazoa
LineageEukaryota> Metazoa> Placozoa> Trichoplacidae> Trichoplax> unclassified Trichoplax.
Aromaticity0.08
Grand average of hydropathy-0.477
Instability index46.06
Isoelectric point5.94
Molecular weight55453.32
Publications
PubMed=30042472

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21823
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     393.12|      40|      40|     306|     345|       1
---------------------------------------------------------------------------
  143-  180 (47.85/25.36)	...VHS..NSIHNSEIF....................AIKWH..P.....nkELIATGSS.DGTAKISQ.PN
  181-  241 (33.55/15.78)	EVEATV..LEHYPNEIDkrqpeasngncgisdryavtSIVWK..P.....dgSQLLTACA.DGKGRIWQLD.
  242-  283 (58.73/32.65)	GKLVAT..LSNHTAPIF....................VCRWNidG.......SLIAMGSA.DMRVTIWDSSS
  287-  324 (49.00/26.13)	KQCCDH..HKGPVTDID.......................W........qnvSIFATCST.DRSVAVCEVGS
  325-  366 (58.85/32.72)	EKPIKS..YEGHTSEIN....................VVRWD..P.....ssNLLASGSD.DCTVKVWNLKQ
  367-  413 (62.09/34.90)	DKCVHD..FRGHVRNIY....................AIKWC..PvkrvvscSCLASASA.DRTIRIWDVDR
  414-  455 (51.36/27.71)	GICLYT..LNRHQSPVY....................SLAFN..S.....dgRLLASGSY.DTAVNIWSLEN
  456-  487 (31.69/14.53)	GLLVRTvmIDGPVSDID.......................WH..K...............dNRIVAVSGNGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.07|      22|      40|      50|      71|       2
---------------------------------------------------------------------------
   50-   71 (38.51/23.83)	ISMVQKGMLYYYVDMTLKDEKN
   93-  114 (36.56/22.31)	MSELSSGNLSYGVATNAKNDQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21823 with Med16 domain of Kingdom Metazoa
Unable to open file!