<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21798
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MSLAELTRNCFQSGISASKWLSLCKLLISKESSISRVPDDIEINLSNSVLVLYRSYPGDPDLQEYLKAAIQDGTLSVATFVATLLQAARSPELHTAATLDTLCRIALDAHYSSGLPPIGSVVRYEESPITILGTVQDALALLRTAHSLPMTHFHQLTTSAAELVILLLSCVSDISQVSTAQAMVHFADANDLLHNFRLAPDVRQVLETFVLSLSFLIGDDAKAAREAQIMHSIQLALGKGDIHGSGSDTDITTFSLMLHRLVSYRAEAFGSGDGPGTVALLMTLFRWASWSPTVFYTQAFLSALTCMEQGSSNALVWKAFVVGRLPHLLAHFESSVNADGVGNSDWRRATQAALTAVSRHSELISHCDNIITRTKTFNAMQDEDVTPSIFRDLLRTMVRTELVGLSFAVELDPSVSSEDTHRLRGEAQDAGVDFEVYLESKIMPDIAIEDLRSFLDRLWMDVGSHHDFANVAIRRFISLANAYDVEGLSHFCKLFFTFEPILEIMALHTKVSDLLCRALLLLDQYDCETVGDPQTAVSHLGDVVLFLQYTTSRFRIDKVPFAPENRSLSSQFLHMTDATHAAERLSGEDGPAFNAWFKALFDSSSEGIEDSILRSTQPKVLLRISATLFSQAIRACLVQKIDRDVLNNGVSYFTGPLLNWTLVGVIKGLVREIQQRGLSAPTHLEILQTLLLSPACPRPVLSLCGPQVLLLFSDKTAKAKLSGIDITSVRRVVNQALNRSTEGNISEIRPAVSWIPREEEPKRAIQVVLALARAGKAPSFDVERCIKIMPPTKFLQLLWSELVISASLGEMDICRRIATFVLTTPRSSSMPPLLPIFLHIISPSLIFAIDHQQPPEHTMNVELLVTVVSSALTAALHLELAMHSVTGDHGFMLGQPSSGMARRFATELRSRQNNRTSRAIAQRLASSQSFVANFPVFMSELG |
Length | 942 |
Position | Tail |
Organism | Hypsizygus marmoreus (White beech mushroom) (Agaricus marmoreus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes>
Agaricomycetidae> Agaricales> Lyophyllaceae> Hypsizygus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.136 |
Instability index | 48.69 |
Isoelectric point | 5.90 |
Molecular weight | 103645.85 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP21798
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 38.40| 11| 412| 93| 104| 3
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93- 104 (17.10/13.62) LHTAATlDTLCR
507- 517 (21.30/12.08) LHTKVS.DLLCR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 84.32| 24| 213| 246| 269| 4
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246- 269 (40.07/28.03) GSDTDITTFSLMLHRLVSYRAEAF
272- 295 (44.25/31.81) GDGPGTVALLMTLFRWASWSPTVF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 160.38| 50| 717| 105| 172| 6
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105- 172 (76.50/75.25) IA...LDAHYSSGLPPIGSVVRYEESPitilgtvqdalallrtahSLPMTHFHQLTTSAAELVILLLSCVS
817- 869 (83.88/51.03) IAtfvLTTPRSSSMPPLLPIFLHIISP..................SLIFAIDHQQPPEHTMNVELLVTVVS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 44.51| 12| 345| 442| 459| 9
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442- 459 (19.03/21.73) IMPDiaiedlRSFLDRLW
788- 799 (25.48/13.78) IMPP......TKFLQLLW
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