Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MTLNHAPLFLSLKPVPIANKEPKNLADFISRVNAQPGGFRQLPEIVGNDASQNEDVGVEDVVMVDAADEAETEADSSVKDAALARLEVLKNVDCAGNAAMLLLDSLSLLVSKQNPTQASSTLSQQLRDMVGIGTLGVDRLDEPTIDEERTKDAGQVAIGWTLMEINRTRDAALKAASLLEKEVDIESRYWSDVMAVKNAGWSLCRVPHERHTLGVRFGFSETSPEFKNSGLAPLRRSEDGSVELDLGRLGGVSECLVVTYLRNDQVVGRSVPTRRRHRRRQDSSSLESRVLEARNTIFSQELWHELVKESRTLAAYDVRLQGSRLRCPTGPDAVITIELLPLASCPPAEEDESLPHNSVAEAISLGLHVLLGYAHRHNELMRTRPMPPHISRSRPQNQTYALLRPVIARLASTRSIDSCTRLVGNLCKALQKAGLASSFILRTPLPASPADAALSSHASASQALVRSLLQPLEFAIDFTILANVSLTLRGRTFLFPITSTHFNVSLPPDSPLRPSCVPCPDGYPDMSALADYLDTSVARALTSHFLARLLSHPSSSRRPWAESVVGTSILDQESERWSLHFSARREDDDDTSALVLSSTVVDHEYDSRPRRRTWKWSSSSPSSSSADASQSESRPLADIVDDVAAMLPS |
Length | 649 |
Position | Head |
Organism | Ophiocordyceps sp. 'camponoti-saundersi' |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Ophiocordycipitaceae> Ophiocordyceps. |
Aromaticity | 0.05 |
Grand average of hydropathy | -0.268 |
Instability index | 64.79 |
Isoelectric point | 5.73 |
Molecular weight | 71073.36 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP21773 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 636.99| 159| 165| 200| 363| 1 --------------------------------------------------------------------------- 125- 286 (244.37/152.06) QLRDMVGIGTLGV..DRLDEPTIDEERTKDAGQVAIGWTLMEIN.RT........RDAA.....LKA.ASLLEKEVDiESRYWSDVMAVK..naGWS.LCRVPHERHTLGVRF.....GFSETS..PEFKN.SGLAPL.RRSEDGSVELDLGRLG...GVSEC..LVVTYLRNDQVVG..RSVPTRRRHRRRQDSSSL 287- 454 (202.88/134.10) ESRVLEARNTIFS..QELWHELVKESRTLAAYDVRLQGSRLRCP.TG........PDAVitielLPL.ASCPPAEED.ESLPHNSVAEAI..slGLHvLLGYAH.RHNELMRTrpmppHISRSR..P..QN.QTYALL.R.....PV...IARLAstrSIDSCtrLVGNLCKALQKAGlaSSFILRTPLPASPADAAL 455- 620 (189.74/116.23) SSHASASQALVRSllQPL..EFAIDFTILANVSLTLRGRTFLFPiTSthfnvslpPDS.......PLrPSCVPC..P.DGYPDMS...ALadylDTS.VARA.LTSHFLARLL.....SHPSSSrrPWAESvVGTSILdQESERWSLHFSARRED...DDDTS..ALVL...SSTVVD..HEYDSRPRRRTWKWSSSS --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) ALVLSSTVVDHEYDSRPRRRTWKWSSS 2) SESRPLADIVDDVAAMLPS | 593 631 | 619 649 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab