<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21736

Description Uncharacterized protein
SequenceMQRYTGAAGNSAGFSGGRDTARLEPSPFSSNYPVSSRRHQQLVPYKLKCDKEPLNNKLGPPDFYPQTPNCPEETLTKEYAQAGYKETVEGIEEAREIVLSQIPHFCKPDVVVKCKEALKKRLRAINESRAQKRKAGQVYGVPLSGSLLIKSGVYPEQRPCNEDTRRKWAEALAQPNKRLRSLSEHVPHGYRRKSLFEVLTRYNVPLLRATWFVKVTYLNQLQARPTPNSISAGASDNQRSNQWTKDVVEYLQQILDEFCSKEGTVVPPSFREQSSPGLNAGTNQIKVKTEASPAGGDGEEPLVHFKWRYMVRLIQWHLTEELLVPSVLIEWLSNQLQERDSIDVLELLLPIVLGLVDTITLSQTYVRMFVELLVRRLSDTSVVDSPKRPSVSSVIAELLRYMVLAVPDTFVSLDCFPLPSFVVPDVYGRGALLKITGGGGIASSKRCDAYRYLSCGYAVCSIQKRASDLATVANPNLQVRGAAKVVQALDKALVTGNLSVAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRASPCQNVKFTGRRDLSQVHVAVSILKNKMDEMNNLSRSKSSNRITMNNIVKGSSLNDACLPVAAGDDSSGLRNNTNNLDEKKDTSGIFESPGPLHDIIVCWLDQHEVSSAAGFTRVDVLIVELIRNGIFYPQAYVRQLIISGITDKNDIMLDVERKRRHHRTLKQLPGSSLFDILEETRTAEEQQLYEIMSTYSSERRLVLSELSCGPSFYASSRGEYASSSCIRKQNDLPVASGGDKHGRVPEQVEDVKALVSSLLSFTYPHPVETEPCQIKTSFQESATSTLSQVETGEAKSGCEDCMRSKGQKLDDGATPFQGFPLIQSDEEDIWWVRKGTKLHESFNVEPAQKSVKQTSRGRAKVVRKTQSLAQLAAARIEGSQGASTSHVCESKLSCPHHKPNMDGDNVKDFDHMRMTNLTEVGKSLKRLRLLERRSVSLWLLKSIRQLVEGSEMTASKATNSISTLSLQPDDKSASKWRLGDEELLSVLYVLDTCCDLVSGARFLVWLLAKIRGGLGSSGQPGRSSMHMRNREHQVCQVSEALVFSSLLRYENILLATDILPDVLSASVNRNSVSATARHPGSAAFAYVRYFLKKYRDVASVARWEKNFRTTCDQRLLAELDNGRSIDGDFVSSSGVSAGEEIDEQVRQKLNGRSSRLMQNMKEIVQRQADEVQRSLKEKKVLPAPKSPPSFEKEDSYQISHDIVFGLVECIRQNGGANPDGDLSIVASAVSAVVVNAGHVIAKHLDFAGGNYQGVNSVSNSLNFVRHTLRIHINSLCLLKDTLGDRFSRVFEIALAAEASAAVTAAFAPAKMQRNQFQPSPETHDAYGNHTSDLSNSGKGFVGRTAKVAAAVSALVVGAVVHGAVSLERMVAALKIKDGLDILQLLRGLKTSTNGVSRAAGTFRMENSTEVSAHWFRILLGNCRTVYDGLIADILGESYILALSRLQQTLPLSLIFPPAYSIFAMVLWRRYIFNREDPQLYQSLSNAINDITRHQPFREICFRNTHQLYNLLASDVGDSEFAAMLESHSPDRNSKILPFVPLRARLFLDALVDCNTPMTTQGDGASEPCDPKDNELKLSERLMQLLDTLQPAKFHWQWVEMRLLLDEQALMEKVAAGKTALESLRSLSPNAEGFALSDSEKGFTEVILSRLLARPDAAPLYSEVVHLLGKLQESLVMDVKWILQGQDAILGRRSTRQQLVHIAQRKGLSTKAQVWKPWGWSSLLSDVIASKTAKRKLEVTSIEEGEVVDDTVDAKRPVKTPSHSVDRSFEGIRSINKYLTEKALAELVLPCIDRSSADIRGILSGDLIKQMGTISDHIKAVTRNGAKQAGSVPSGNEMPSSKSSGRKGIRGGSPNIGRRAPVGNDPSPPSASALRAALWLRLQFIIRLLPVIMADRSMRHTLASAILGLLATRMIYEDADLPLPPTNAIALRREVDSLLEPPLDVLLDRPGESLFERLLCVLHALLGSCKPSWLKSRPASKSTIRTQRDFSAFDNEAAEGLQSALDHMELPETIRRRIQAAMPILPPCRHPSIQCQPPQLSLAALTPLQSCILGAGPQQKSSSVSWVPTNVSSRSKAVLPSHDPEMEVDPWTLLEDGTSCPSTSSGSNGPSGVTGDLANLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2203
PositionKinase
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.06
Grand average of hydropathy-0.273
Instability index48.66
Isoelectric point8.53
Molecular weight243275.71
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21736
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.82|      15|      18|     750|     765|       1
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  750-  765 (22.49/15.65)	STYSSERRLVLSElSC
  768-  782 (28.32/15.58)	SFYASSRGEYASS.SC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.97|      27|      27|    1879|    1905|       2
---------------------------------------------------------------------------
 1850- 1878 (33.71/19.14)	RSSADIRG..ILSGDlikQ.MGTISDHIKAVT
 1879- 1905 (46.31/29.64)	RNGAKQAGS.VPSGN...E.MPSSKSSGRKGI
 1906- 1931 (26.95/13.51)	RGGSPNIGRrAPVGN...DpSPPSASALR...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.56|      18|      18|    1690|    1707|       3
---------------------------------------------------------------------------
 1690- 1707 (29.33/15.14)	FALSDSEKGFTEVI..LSRL
 1708- 1727 (25.23/12.05)	LARPDAAPLYSEVVhlLGKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     370.62|     123|     303|     491|     641|       4
---------------------------------------------------------------------------
  491-  641 (183.39/145.27)	KALVTGNLSVAYSslfndlsdalmeerWIKEVSPC.LQSSLMWIGTVELSLICSifflCEwATCDYRDCRASPCQNVK.....FTG.......RRDLSQVHVAvsilkNKMDEMNNLSRSKSSNRITMN...NIV.KGSSLndACLPVAAGDDSSGlrNNTNNLDEKK
  809-  948 (187.23/98.41)	KALVSSLLSFTYP..............HPVETEPCqIKTSFQESATSTLSQVET....GE.AKSGCEDCMRSKGQKLDdgatpFQGfpliqsdEEDIWWVRKG.....TKLHESFNVEPAQKSVKQTSRgraKVVrKTQSL..AQLAAARIEGSQG..ASTSHVCESK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.21|      17|     305|     102|     120|       5
---------------------------------------------------------------------------
  102-  120 (28.96/23.74)	IPHFCKPDVVvkCKEALKK
  418-  434 (31.25/18.98)	LPSFVVPDVY..GRGALLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.29|      15|      18|     999|    1013|       8
---------------------------------------------------------------------------
  999- 1013 (24.81/16.29)	SIRQL.VEGSEMTASK
 1017- 1032 (20.49/11.97)	SISTLsLQPDDKSASK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.94|      47|     489|    1475|    1523|       9
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 1475- 1523 (77.99/57.16)	LLG..NCRTVYDGliADI.LGESYILALSRLQQTL...PLSLIFP.PAYSIFAMVL
 1962- 2015 (61.95/38.83)	ILGllATRMIYED..ADLpLPPTNAIALRREVDSLlepPLDVLLDrPGESLFERLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.35|      11|      18|     678|     688|      10
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  678-  688 (18.87/11.40)	LIVELI..RNGIF
  697-  709 (14.48/ 7.04)	LIISGItdKNDIM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21736 with Med12 domain of Kingdom Viridiplantae
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