<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21734

Description Uncharacterized protein
SequenceMDAWVEENNGGGGDGSFSSSTGGAPTAEIFEEQEDGEGEEKVFVAVPGQHSKSGRSLLTWALRHVAAVAGAAVVVAHVHVPAQMIPMMGSKFHVSKLRPEQVSAYRQYEREKVEKHMDEYIHQCSKMKVKCEKLVTENDNVAKGIVELVSLHGVSKLIMGAAADKHYSRKMKMPKSKTALAVLQKADASCKIWFVCKENLIYTREAGAPVSHNAAALPASKSSISTLSEWGGQPNGYASKEVDGHIQRSMSEKVVAASVRTSLRLPSRLSVRTTFSRQSIEDNSANSWDSVPRGSFPSSHQTSSTVTDEGFSDSSSFSTPSHDASEILPSVHEGRHLQNPASYCEQDAMNSNIDIFDKLEEAFTEDEKHQKQTFDESMRRQRAEEEPILFHRKANNFDDTSLNEAKQRKEVIEALAKANGVIELMKQEMDALKQDRDDIIDKLVKMSEQKATLEQRVDEYGGIVKDLEDTLATSKSLIHSQQLEYDKLKHERDNALKDADELRKEKEKTVSYSSLTWNTEFSLLELQLATQNFSDTVKIGEGGFGRVYRGFLRNTTVAIKMLRSHNLQGQSQFRQEVVVLSRVRHPNLVTLMGSCSEASGLVYEFLPNGSLEDRLACENDTPPLTWQVRTRIIGEICSALVFLHSNKPHPVIHGDLKPANILLDANLVSKLSDFGISCLLVKSSTMSTSIYQTTSPRGTFSYMDPEFLTTGELTARSDIYSLGIVILQMVTGKPALGIGRAVEDALDRDELELLVDKSAGQWPFVQAKKLMLLGLQCAELSRRRRPYRMSDVWCVIEPLVKSASLSATPQSFGHQFVERHTPSCFFCPISQVVMRNPHIAADGYTYEAEVIKGWLHSGRSMSPMTKLPLAHHHLIPNRALHSAIQEHFKQQQKPPS
Length896
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.06
Grand average of hydropathy-0.432
Instability index47.75
Isoelectric point6.39
Molecular weight99711.79
Publications
PubMed=22580951

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21734
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     118.66|      31|      82|     345|     376|       1
---------------------------------------------------------------------------
  345-  375 (52.43/27.02)	EQDAMNSN.IDIFDKLEEAFTEDE..KHQKQTFD
  428-  458 (40.10/18.40)	EMDALKQDrDDIIDKLVK.MSEQK..ATLEQRVD
  484-  509 (26.12/ 8.63)	EYDKLKHE.RD..NALKDA...DElrKEKEKT..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.90|      24|     503|      73|      97|       2
---------------------------------------------------------------------------
   73-   97 (39.93/30.15)	VVVAHVHVPaQMIPMMGSKFHVSKL
  578-  601 (41.97/27.00)	VVLSRVRHP.NLVTLMGSCSEASGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.40|      28|     273|       5|      32|       3
---------------------------------------------------------------------------
    5-   32 (51.47/31.84)	VEENNGGGGD....GSFSSS..TGGAPTAEIFEE
  280-  313 (41.93/24.58)	IEDNSANSWDsvprGSFPSShqTSSTVTDEGFSD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21734 with Med32 domain of Kingdom Viridiplantae
Unable to open file!