<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21729

Description Uncharacterized protein
SequenceMATQEEAEVTESSPSSDPPITIGLAVSSSKSSKYAVKWALKNFGARERTRFMLIHVRQMVTLVPTRLGNYVPVDQVRDDIASAYEKEVECEAQNMLLMYKNMCNGKVEAEVLVVKGDDVAETISGVVSACQIHKLVVGVSSQGNFMRKSKGTRTSSRICKSVPSFCMVYSVSKGGLSTVYSPGSEGDNSSEIFQVNESSNSELYSDDKSSVSDITPSRISRPNLPGGNLDNSSSADHNRPRSLQEYLTGSALTSIVEKDQSGSPCGTDQITESSNLPISDKSPTVSRALQELMRSEDKASTPCAGHISAPTNLPVLDKDPSVKSALQELMLSEDKANTPCATNKISGSSNLPTTDKATTVSNALQELMLSEDKDNANFEREKLRIKLGHMQGVCKLVHDESTSASQQMIDLIQKRAQEEARLVEVHSRINTAIEAARKEREQRYAVEAQARHVKELAKEEALKKQYFQLRASREADNIQKLEKLLEFGGKSHIIFTWEEMESATSSFSEALGSGANGTVYKGKIHQTTVAIKVLKSDDSRITKHFEREIEVLGKTRHRHLLLLLGACLDRACLVYEYMENGSLEDRLQCKGGTSPLPWYHRFRIAWEIALALIYLHSSKPKPIIHRDLKPANILLDSNFTSKIGDAGIATLLPLRDASSTHTIRKDTDLVGTLFYMDPEYQRSGQVSAKSDVYALGMVFLQLLTAKSPMGLADTVERAVAQRRLVDILDQRAGKWPVKAAYELAQLGLSCLEMRSKDRPDLKSNVLVVLERLNNIATTACDSVQQVPTAPPSHFVCPILKRVMQDPCIASDGYSYERVAIEMWLHENDVSPLTKTRLPDKNLVPNHALLCAINSWKGEAGAGGLTD
Length866
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.05
Grand average of hydropathy-0.373
Instability index44.39
Isoelectric point6.61
Molecular weight95395.32
Publications
PubMed=22580951

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21729
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     207.40|      34|      36|     275|     308|       1
---------------------------------------------------------------------------
  238-  271 (45.19/24.90)	NRPRSLQEYLTGSALTSIVE.KDQSGSPCgTD.QIT
  275-  308 (66.69/40.11)	NLPISDKSPTVSRALQELMRSEDKASTPC.AG.HIS
  312-  346 (59.36/34.93)	NLPVLDKDPSVKSALQELMLSEDKANTPC.ATnKIS
  350-  373 (36.16/18.51)	NLPTTDKATTVSNALQELMLSEDK............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.05|      20|      38|     115|     151|       2
---------------------------------------------------------------------------
  120-  143 (28.25/52.23)	AETIS.GVVSACqihkLVVGVSSQG
  155-  175 (33.80/10.75)	SSRICkSVPSFC....MVYSVSKGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     182.53|      59|     333|      42|     109|       4
---------------------------------------------------------------------------
   42-  109 (83.93/90.69)	NFgARERTRFMLIHVRQMVTLVPTRlgNYVPVDQVRDDIasayEKEVECEAQnmLLMYKNMCNGKVEA
  377-  435 (98.60/72.52)	NF.EREKLRIKLGHMQGVCKLVHDE..STSASQQMIDLI....QKRAQEEAR..LVEVHSRINTAIEA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21729 with Med32 domain of Kingdom Viridiplantae
Unable to open file!