<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21727

Description Uncharacterized protein
SequenceMATPASVVSDVAEPQAEESPQVEAAATAEQEGPKSEAAAAAESAGASNPPAVAAAAPGDASSAPSPSPAPTTACDSVVVPPPASPATPAAPGPARPQFAGSPAYMAPPGPSPSPAFSYNVLPRAPPAQQVGSGAASVQPGSSPAPMAAPMPAAALQPPAPGQYFGNRPSFSYNVVSHANARLPTGQQFQPGTGTNHAGQASRFIPPGSLQPPAPGPLARPGIPGAIAPTPGSIQLPFSVPRPSNIPFGASAQQGNLDINTSKSDAPSVPEVNPHTMQLPTGPPSNSPSTIASASGSSSIPIQMPSNLSLPPRPEVFGTARPSVPGQPSPIFSNPTSLPGRPIVPSAAPLPQTAPSIANPGAMLQNSQPTFYPSYPGHGIVPPQPLWGHLHPPQPTGFQQPPFQSYPGPVGSLGKPMVGASAATMAFANVQPSGDPTAGEDRKEQMSTNPGSEQPTHASAGPDSTGHGGQVNEQLEDKRSTIVQGSDAWSAHKTETGVVYYYNALTGESTYQKPPGYKGEPEKVATQPVPVSWDKVAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELLKNVESDSLKEGSTSLQDAATIDNKGVISIDASTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGASSAPSPLATSSSAASELNGSKPADAALKGQQVSNNCEKSKDNNGDANMSDSSSDSDDEEHGPSKEDCIRQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKKAAQKAAVEAYKELLEEASKDINEKTEYQEFKRKWGADPRFEALDRKEREALFSEKVKAIQEKVKSMRKAVVADFKSMLRESKDVTSTSRWTKVKENFRSDPRYKATKHEERETIFNEYIAELKSAEQEAEQAARAKVDEQAKLKERERETRKRKEREEQEMERVKMKVRRKEAVSSYQALLVEMIKDPKVSWTESKPKLEKDPQGRALNPDLGQSDAEKLFRDHVKDLYERCVRDFRALLSEVITPEVAARTSDEGRTAVNSWSEAKCLLRSDPRYNKLASKDRESIWRRYADDLMRKVKQSDTKEKEKEKSDTDGKQRRSSDPPRRR
Length1098
PositionUnknown
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.06
Grand average of hydropathy-0.782
Instability index55.69
Isoelectric point7.94
Molecular weight118099.23
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21727
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     241.48|      27|      27|     295|     321|       1
---------------------------------------------------------------------------
   65-   96 (31.60/ 7.32)	SPSPAPT..TA............CDSVVVPPPaspatP.AAPG.PARP
  140-  168 (35.54/ 9.14)	GSSPAPMaaPM............PAAALQPPA.....PgQYFG.N.RP
  198-  220 (30.74/ 6.93)	GQASRFI..P.............PGSLQ.PPA.....P....GpLARP
  264-  287 (32.58/ 7.77)	DAPSVPE..VN............PHTMQLPTG.....P.P....SNSP
  295-  321 (50.00/15.78)	GSSSIPI..QM............PSNLSLPPR.....P.EVFG.TARP
  325-  348 (31.53/ 7.29)	GQPS.PI.fSN............PT..SLPGR.....P..IVP.SAAP
  354-  391 (29.50/ 6.36)	PSIANPG..AMlqnsqptfypsyPGHGIVPPQ.....P..LWG.HLHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     318.63|      47|      47|     841|     887|       2
---------------------------------------------------------------------------
  710-  750 (49.96/21.96)	..........................IRQFKEMLKE....RGVAP.FS........KWEKELPKIVFDPRFKAiP.S....HSTR
  751-  818 (51.78/23.00)	RAIFDHyvrtraeeerkekkaaqkaaVEAYKELLEE.aS.KDINE.KT........EYQEFKRKWGADPRFEA.L.D....RKER
  819-  881 (71.01/33.96)	EALFSE....kvkaiqekvksmrkavVADFKSMLRE..S.KDVTS.TS........RWTKVKENFRSDPRYKA.T.K....HEER
  882-  926 (42.99/17.98)	ETIFNE...................yIAELKSAEQE..A.EQ....AA........R.AKVDEQAKLKERERE.TrK....RKER
  927-  987 (44.52/18.86)	EEQEME.........rvkmkvrrkeaVSSYQALLVE..MiKD.PK.VS.........WTESKPKLEKDPQGRA.L.NpdlgQSDA
  988- 1046 (28.11/ 9.50)	EKLFRD...........hvkdlyercVRDFRALLSEviT.PEVAArTSdegrtavnSWSEAKCLLRSDPRY..............
 1047- 1079 (30.27/10.73)	....NK..................laSKDRESIWRR..Y.AD..D.LM........R..KVKQ...SD......T.K....EKEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     194.63|      49|      51|     465|     514|       3
---------------------------------------------------------------------------
  429-  481 (60.46/31.63)	VQPSGDPTAGEdrkeqmsTNPGS....EQPTHASAGPDSTGHGGQvNEQLEDKRSTI
  482-  530 (86.97/44.05)	VQGSDAWSAHK.......TETGVVYYYNALTGESTYQKPPGYKGE.PEKVATQPVPV
  535-  566 (47.20/20.19)	VAGTD.WSIVT.......TSDGKKYYYDNKQKVSSWQLPP.................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     174.92|      33|      75|      32|      64|       4
---------------------------------------------------------------------------
    4-   31 (32.68/10.10)	.PASVVS.....DVAEPQ.AEESPQVEAAATAE.Q..E
   32-   64 (55.82/23.19)	GPKSEAA.....AAAESAGASNPPAVAAAAPGDASSAP
  109-  139 (51.33/20.65)	GP.SPSP.....AFSYNVLPRAPPA.QQVGSGAASVQP
  624-  660 (35.08/11.46)	.PASPSAldlikKKLQDAGASSAPSPLATSSSAASELN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.57|      11|     164|     228|     251|       5
---------------------------------------------------------------------------
  170-  180 (19.96/ 7.48)	FSY....NVVSHANA
  237-  251 (15.61/ 7.55)	FSVprpsNIPFGASA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21727 with Med35 domain of Kingdom Viridiplantae
Unable to open file!