<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21722

Description Uncharacterized protein
SequenceMQDGAAAGGMRPWRQDLDSLLRPRVIDTIARKLAQVYHGQLDSTQDLNRVAASFENKVFHEANSKGDYLRRISVRLVSLKQKQKQKLLQRISGHQQQIQAGSDMRQINAVHAIHGGNSSITAMPQVTSMMSTHGRQSSQLQSLPMTPPGSGLVPNQNVSYPFAPNMHVNVKQEQLEVTGKPDQIRNSCHASPTNFSGGNPISTAHQQRQPLDQANVQEQMMANQQGLGFNQQQDRLKYQILVEQQANVTNTNNSHPGAQNNHPGITVGFRSMLKMHEQEALNEHIKMEPQPVSLLQPLITVSQQNSSFSTMGRAGEVDWREDMFQQIKPLKDAHLSELMELNQVLHVPKLTEKQFESLPKDKAGQYIFRVNLKKRTTLVLNFLLLEKCNIPDNYRGQFSMFLKSIKDLVGYYRKSKNRMMDARDRPQIFHGQPQIINLSGDQAPSGGSPSHQKQQEQLVHSQLRENIISTTSAAQEMNHNHLFGVARSCFPEKSRGSLQSLPIDKRQECCTLTPSPISKSGVLNVSSPSASLKSTTPSPDATPGAAKAEASSSVSVKFTLPSPVTTSGVVKVSSSYASVNSTFPSAIAESATIQAATPCASANSALPSPFAKSGVIEATSSVTNSGCAPFALPCPSMHSTSSEDIESLYALLLQDNSDPSGAQAAVGGTAIKTVNVSKQVTTTKPIMQASPIEAETADHQAEDNLHPRNEILVAKKPIDRLLDAVRISSPSMLCSAANSVYSVLNMNDWVPPREIDAFQYSQQGGSNTVKKMKRVFESTSLCSESAPLGSMDGSCMTFDWTVSEAEYSGERGAKRQKVQNAKDTLLDEINSVNNMLLDTFISIAQDNGTDGMASGNGGTLIELFYTAISLTPDLASLFATSGMSIVMPVKVLVPVDYPRSSPVLVCDQGDEQMRKRFSEISGAADVAFRRTLYGLQEPMSVVDMARAWDASVRRSIVDFAQRHGGGMFSSRYGEWTWC
Length978
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.06
Grand average of hydropathy-0.427
Instability index52.88
Isoelectric point8.26
Molecular weight106868.48
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21722
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     164.75|      44|      45|     511|     555|       1
---------------------------------------------------------------------------
  511-  548 (61.86/39.71)	.........TLTPSPISKSGVLNVSS............PSASLKSTTPSPDATPGAAKA
  550-  595 (67.50/45.74)	ASSSVSvkfTL.PSPVTTSGVVKVSS............SYASVNSTFPSAIAESATIQA
  596-  640 (35.39/15.67)	ATPCAS.anSALPSPFAKSGVIEATSsvtnsgcapfalPCPSMHST.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.55|      19|      46|     347|     366|       2
---------------------------------------------------------------------------
  347-  366 (28.57/17.13)	VPKLTEKQF....ESLpKDKAGQY
  390-  412 (29.98/13.34)	IPDNYRGQFsmflKSI.KDLVGYY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.19|      15|      19|      35|      50|       3
---------------------------------------------------------------------------
   35-   50 (23.48/18.25)	QVYHgQLDSTQD.LNRV
   57-   72 (21.71/11.23)	KVFH.EANSKGDyLRRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     190.98|      42|      45|     134|     175|       4
---------------------------------------------------------------------------
  134-  167 (53.85/25.84)	.............G....RQSSQLQSLPMTP.PG.SGLVPNQNVSYPFAPNMH
  168-  213 (55.53/26.86)	VNVKQEQL..evtG....KPDQIRNSCHASP.TNfSGGNPISTAHQQRQPLDQ
  214-  262 (50.44/23.77)	ANV.QEQMmanqqGlgfnQQQDRLKYQILVE.QQ.AN.VTNTNNSHPGAQNNH
  265-  302 (31.17/12.03)	ITVGFRSM......lkmhEQEALNEHIKMEPqPV.SLLQPLITVS........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.25|      30|      43|     680|     709|       5
---------------------------------------------------------------------------
  680-  709 (51.16/28.16)	VTTTKPIMQASPIEAETADHQAEDNLHPRN
  725-  754 (53.09/29.47)	VRISSPSMLCSAANSVYSVLNMNDWVPPRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.32|      19|     218|      93|     114|       9
---------------------------------------------------------------------------
   93-  114 (29.40/24.92)	GHQQQIQAgsdMRQINAVHAIH
  115-  133 (33.92/19.70)	GGNSSITA...MPQVTSMMSTH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.05|      17|      38|     796|     812|      12
---------------------------------------------------------------------------
  796-  812 (32.08/23.86)	MTFDWTVSEAEYSGERG
  835-  851 (29.97/21.78)	MLLDTFISIAQDNGTDG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21722 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ILVEQQANVTNTNNSHPGAQNNHPGITVGFRSML
2) QKLLQRISGHQQQIQAGSDMRQINAVHAIHGGNSSITAMPQVTSMMSTHGRQSSQLQSLPMTPPGSGLVPNQNVSYPFAPNMHVNVKQEQLEVTGKPDQIRNSCHASPTNFSGGNPISTAHQQRQPLDQANVQEQMMANQQGLGF
240
85
273
229










Molecular Recognition Features






MoRF SequenceStartStop




NANANA