<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21721

Description Uncharacterized protein
SequenceMADGAGRRWQDEVEPELRPSLILQQTVAKIDELFRAKEESPPEGLYEDVANVENEAFMTAKDKIDYLRRVSYMLSRCRNQAQLQAAARRQQHNEMMHQIQLANTVQAIHGCNPSFTAVPQAVPMMASPSRPTFQSPNQHMAHPFASNMQINVNQGPSDMMPMLYHTFNSQPAMVAPMAQSVGQQIMQPIVMQSDNQHPVMQLQPTNIAQCHWENMAQLQGQPIAQPNGHQSYLLSQNVCAYAQHLQPTVQQQYFGINQQPVGLQRYQMLGANVAKTNDGYSGGWNNQQNAGWASGIQSPSTACEQVELKRQTNMESQLMPLAERQITINQQSNAHCPSPQSQARMESAGEVDWREEMVQQIKSLKDAYFLELVELDQNFVLQRLTEEQFKSLPREKVDTYNQMLQKKCYISHVLEFLQLQKSLETYRGKLPVYKKAIHLLLGQGKRKANAEMNTGQESKSCPRQSPPETINLTADKAPFTGGKSYQQKLSADESIDQVRQNVVTTPSAEKKTDSKQLQEVKGPCFSIKSPGALQSSPITDVGLSCVLSLTDKSGVASPNALLKSRSQSSIAHPVVIAVASPCLSTKSTLTSTVDKLGFVAGASSCSSVKSASPSAIAKSGILPVASPSDGDSSSLLHNNGAVNCCNLTPDPPCQTHTPAGQAEDQEHGGAETPVAKRPIDRLVAAVLSSSPAVLRSSVNLIESALREMDSVPSRIQSNSKMKRIFCVTSASELPTFGSTDGSTVTFEFDASDSALSSNRSVKRQKTQNTKDALLDETEAVNSRLIDTVISITSDDREDGAMTMTLVKLSYTAVSLAPSLKLHFATTGNLQPLVMPMTLLIPADYPRSSPVIVEDEGDAQLRTKFSCISVVVDAAFRRELHNLQEPRSLKETAMVWDSCVRRAITEYAYLLGGGTLSSSIEHVRG
Length924
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.05
Grand average of hydropathy-0.421
Instability index61.81
Isoelectric point6.40
Molecular weight101249.41
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21721
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     141.79|      37|      37|     219|     255|       1
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  176-  192 (22.10/ 9.43)	...PMAQSVGQQ..................IMQPIVMQ....
  219-  255 (72.38/49.77)	QGQPIAQPNGHQSY.LLSQNVC....AYAQHLQPTVQQQYFG
  257-  291 (47.31/29.66)	NQQPV....GLQRYqMLGANVAktndGYSGGWN...NQQNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      74.49|      12|      20|     555|     566|       2
---------------------------------------------------------------------------
  503-  514 (18.44/10.61)	VTTPSAEKKTDS
  527-  537 (17.68/ 9.80)	IKSPGA.LQSSP
  555-  566 (20.72/13.04)	VASPNALLKSRS
  578-  587 (17.64/ 9.76)	VASP..CLSTKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.33|      17|      37|     707|     723|       3
---------------------------------------------------------------------------
  707-  723 (30.30/21.49)	EMDSVPSRIQSNSKMKR
  747-  763 (28.03/19.26)	EFDASDSALSSNRSVKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.63|      20|      49|     623|     642|       4
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  623-  642 (35.58/21.85)	PVAS.PSDGDSSSLLHNNGAV
  673-  693 (29.06/16.51)	PVAKrPIDRLVAAVLSSSPAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.61|      34|      42|      80|     114|       5
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   80-   99 (26.43/ 8.82)	....................QA.QLQAAARR...QQHNE.MMHQI
  100-  143 (31.05/15.39)	QLANTVQAIHGCnPSftavpQAvPMMASPSRptfQSPNQhMAHP.
  325-  361 (54.14/25.41)	QITINQQSNAHC.PS..pqsQA.RMESAGEV...DWREE.MVQQI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21721 with Med15 domain of Kingdom Viridiplantae
Unable to open file!