<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21720

Description Uncharacterized protein
SequenceMQDGAAAGGMRPWRQDLDSLLRPRVIDTIARKLAQVYHGQLDSTQDLNRVAASFENKVFHEANSKGDYLRRISVRLVSLKQKQKQKLLQRISGHQQQIQAGSDMRQINAVHAIHGGNSSITAMPQVTSMMSTHGRQSSQLQSLPMTPPGSGLVPNQNVSYPFAPNMHVNVKQEQLEVTGKPDQIRNSCHASVSPFASGVQLSQQMVQSVASQNLKQLALQMQPTNFSGGNPISTAHQQRQPLDQANVQEQMMANQQGLGFNQQQDRLKYQILVEQQANVTNTNNSHPGAQNNHPGITVGFRSMLKMHEQEALNEHIKMEPQPVSLLQPLITVSQQNSSFSTMGRAGEVDWREDMFQQIKPLKDAHLSELMELNQVLHVPKLTEKQFESLPKDKAGQYIFRVNLKKRTTLVLNFLLLEKCNIPDNYRGQFSMFLKSIKDLVGYYRKSKNRMMDARDRPQIFHGQPQIINLSGDQAPSGGSPSHQKQQEQLVHSQLRENIISTTSAAQEMNHNHLFGVARSCFPEKSRGSLQSLPIDKRQECCTLTPSPISKSGVLNVSSPSASLKSTTPSPDATPGAAKAEASSSVSVKFTLPSPVTTSGVVKVSSSYASVNSTFPSAIAESATIQAATPCASANSALPSPFAKSGVIEATSSVTNSGCAPFALPCPSMHSTSSEDIESLYALLLQDNSDPSGAQAAVGGTAIKTVNVSKQVTTTKPIMQASPIEAETADHQAEDNLHPRNEILVAKKPIDRLLDAVRISSPSMLCSAANSVYSVLNMNDWVPPREIDAFQYSQQGGSNTVKKMKRVFESTSLCSESAPLGSMDGSCMTFDWTVSEAEYSGERGAKRQKVQNAKDTLLDEINSVNNMLLDTFISIAQDNGTDGMASGNGGTLIELFYTAISLTPDLASLFATSGMSIVMPVKVLVPVDYPRSSPVLVCDQGDEQMRKRFSEISGAADVAFRRTLYGLQEPMSVVDMARAWDASVRRSIVDFAQRHGGGMFSSRYGEWTWC
Length1009
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.05
Grand average of hydropathy-0.412
Instability index53.35
Isoelectric point8.39
Molecular weight110197.30
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21720
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     175.99|      44|      45|     542|     586|       1
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  542-  586 (72.93/43.64)	TLTPSPISKSGVLNVSS............PSASLKSTTPSPDATPGAAKAeASSSVS
  590-  632 (75.31/41.30)	TL.PSPVTTSGVVKVSS............SYASVNSTFPSAIAESATIQA.ATPCAS
  635-  671 (27.75/10.41)	SALPSPFAKSGVIEATSsvtnsgcapfalPCPSMHST....................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.51|      16|      16|     104|     119|       2
---------------------------------------------------------------------------
  104-  119 (29.22/16.81)	MRQINAVHAIHGGNSS
  123-  138 (30.29/17.69)	MPQVTSMMSTHGRQSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.55|      19|      46|     378|     397|       3
---------------------------------------------------------------------------
  378-  397 (28.57/22.49)	VPKLTEKQF....ESLpKDKAGQY
  421-  443 (29.98/17.53)	IPDNYRGQFsmflKSI.KDLVGYY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.29|      26|      45|     163|     205|       4
---------------------------------------------------------------------------
  147-  181 (30.97/20.13)	PPGSGLVPNQNVsypfAPNmhvNVKQEQLEVtgKP
  194-  223 (38.32/33.21)	PFASGVQLSQQMvqsvASQ...NLKQLALQM..QP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     187.70|      47|      94|     677|     723|       5
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  676-  722 (74.88/43.46)	IESLYA.LL.LQDNSDPSGAQA....AVGGTAIKTVN.VSKQV.TTTKPIMQASP
  723-  767 (55.36/30.27)	IEAETAdHQ.AEDNLHP...RN....EILV.AKKPIDrLLDAV.RISSPSMLCSA
  768-  818 (57.46/31.69)	ANSVYS.VLnMNDWVPPREIDAfqysQQGGS..NTVK.KMKRVfESTSLCSESAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.34|      25|     244|     225|     252|       6
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  225-  249 (46.08/26.22)	NFSGGN.PI..STAHQ.QRQPLDQANVQE
  468-  496 (31.27/ 8.56)	NLSGDQaPSggSPSHQkQQEQLVHSQLRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.66|      33|      37|     267|     303|       8
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  254-  277 (13.15/ 7.92)	..............NQQGL.......GFnqqQDRLKYQilvEQQA
  278-  311 (56.93/34.22)	NVTNTNNSHPgAQNNHPGITV.....GF...RSMLKMH...EQEA
  313-  342 (29.58/11.62)	NEHIKMEPQP.VSLLQPLITVsqqnsSF...STM...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.04|      17|     422|      22|      40|       9
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   22-   40 (26.95/20.59)	RPRVIDtiARKLAQVYHGQ
  447-  463 (34.09/19.84)	KNRMMD..ARDRPQIFHGQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.05|      17|      38|     827|     843|      10
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  827-  843 (32.08/26.03)	MTFDWTVSEAEYSGERG
  866-  882 (29.97/23.77)	MLLDTFISIAQDNGTDG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21720 with Med15 domain of Kingdom Viridiplantae
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