<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21720

Description Uncharacterized protein
SequenceMQDGAAAGGMRPWRQDLDSLLRPRVIDTIARKLAQVYHGQLDSTQDLNRVAASFENKVFHEANSKGDYLRRISVRLVSLKQKQKQKLLQRISGHQQQIQAGSDMRQINAVHAIHGGNSSITAMPQVTSMMSTHGRQSSQLQSLPMTPPGSGLVPNQNVSYPFAPNMHVNVKQEQLEVTGKPDQIRNSCHASVSPFASGVQLSQQMVQSVASQNLKQLALQMQPTNFSGGNPISTAHQQRQPLDQANVQEQMMANQQGLGFNQQQDRLKYQILVEQQANVTNTNNSHPGAQNNHPGITVGFRSMLKMHEQEALNEHIKMEPQPVSLLQPLITVSQQNSSFSTMGRAGEVDWREDMFQQIKPLKDAHLSELMELNQVLHVPKLTEKQFESLPKDKAGQYIFRVNLKKRTTLVLNFLLLEKCNIPDNYRGQFSMFLKSIKDLVGYYRKSKNRMMDARDRPQIFHGQPQIINLSGDQAPSGGSPSHQKQQEQLVHSQLRENIISTTSAAQEMNHNHLFGVARSCFPEKSRGSLQSLPIDKRQECCTLTPSPISKSGVLNVSSPSASLKSTTPSPDATPGAAKAEASSSVSVKFTLPSPVTTSGVVKVSSSYASVNSTFPSAIAESATIQAATPCASANSALPSPFAKSGVIEATSSVTNSGCAPFALPCPSMHSTSSEDIESLYALLLQDNSDPSGAQAAVGGTAIKTVNVSKQVTTTKPIMQASPIEAETADHQAEDNLHPRNEILVAKKPIDRLLDAVRISSPSMLCSAANSVYSVLNMNDWVPPREIDAFQYSQQGGSNTVKKMKRVFESTSLCSESAPLGSMDGSCMTFDWTVSEAEYSGERGAKRQKVQNAKDTLLDEINSVNNMLLDTFISIAQDNGTDGMASGNGGTLIELFYTAISLTPDLASLFATSGMSIVMPVKVLVPVDYPRSSPVLVCDQGDEQMRKRFSEISGAADVAFRRTLYGLQEPMSVVDMARAWDASVRRSIVDFAQRHGGGMFSSRYGEWTWC
Length1009
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.05
Grand average of hydropathy-0.412
Instability index53.35
Isoelectric point8.39
Molecular weight110197.30
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21720
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     175.99|      44|      45|     542|     586|       1
---------------------------------------------------------------------------
  542-  586 (72.93/43.64)	TLTPSPISKSGVLNVSS............PSASLKSTTPSPDATPGAAKAeASSSVS
  590-  632 (75.31/41.30)	TL.PSPVTTSGVVKVSS............SYASVNSTFPSAIAESATIQA.ATPCAS
  635-  671 (27.75/10.41)	SALPSPFAKSGVIEATSsvtnsgcapfalPCPSMHST....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.51|      16|      16|     104|     119|       2
---------------------------------------------------------------------------
  104-  119 (29.22/16.81)	MRQINAVHAIHGGNSS
  123-  138 (30.29/17.69)	MPQVTSMMSTHGRQSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.55|      19|      46|     378|     397|       3
---------------------------------------------------------------------------
  378-  397 (28.57/22.49)	VPKLTEKQF....ESLpKDKAGQY
  421-  443 (29.98/17.53)	IPDNYRGQFsmflKSI.KDLVGYY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.29|      26|      45|     163|     205|       4
---------------------------------------------------------------------------
  147-  181 (30.97/20.13)	PPGSGLVPNQNVsypfAPNmhvNVKQEQLEVtgKP
  194-  223 (38.32/33.21)	PFASGVQLSQQMvqsvASQ...NLKQLALQM..QP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     187.70|      47|      94|     677|     723|       5
---------------------------------------------------------------------------
  676-  722 (74.88/43.46)	IESLYA.LL.LQDNSDPSGAQA....AVGGTAIKTVN.VSKQV.TTTKPIMQASP
  723-  767 (55.36/30.27)	IEAETAdHQ.AEDNLHP...RN....EILV.AKKPIDrLLDAV.RISSPSMLCSA
  768-  818 (57.46/31.69)	ANSVYS.VLnMNDWVPPREIDAfqysQQGGS..NTVK.KMKRVfESTSLCSESAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.34|      25|     244|     225|     252|       6
---------------------------------------------------------------------------
  225-  249 (46.08/26.22)	NFSGGN.PI..STAHQ.QRQPLDQANVQE
  468-  496 (31.27/ 8.56)	NLSGDQaPSggSPSHQkQQEQLVHSQLRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.66|      33|      37|     267|     303|       8
---------------------------------------------------------------------------
  254-  277 (13.15/ 7.92)	..............NQQGL.......GFnqqQDRLKYQilvEQQA
  278-  311 (56.93/34.22)	NVTNTNNSHPgAQNNHPGITV.....GF...RSMLKMH...EQEA
  313-  342 (29.58/11.62)	NEHIKMEPQP.VSLLQPLITVsqqnsSF...STM...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.04|      17|     422|      22|      40|       9
---------------------------------------------------------------------------
   22-   40 (26.95/20.59)	RPRVIDtiARKLAQVYHGQ
  447-  463 (34.09/19.84)	KNRMMD..ARDRPQIFHGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.05|      17|      38|     827|     843|      10
---------------------------------------------------------------------------
  827-  843 (32.08/26.03)	MTFDWTVSEAEYSGERG
  866-  882 (29.97/23.77)	MLLDTFISIAQDNGTDG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21720 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ILVEQQANVTNTNNSHPGAQNNHPGITVGFRSML
2) ITAMPQVTSMMSTHGRQSSQLQSLPMTPPGSGLVPNQNVSYPFAPN
3) LALQMQPTNFSGGNPISTAHQQRQPLDQANVQEQMMANQQGLG
4) QKLLQRISGHQQQIQAGSDMRQINAVHAIH
271
120
217
85
304
165
259
114










Molecular Recognition Features






MoRF SequenceStartStop




NANANA