<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21717

Description Uncharacterized protein
SequenceMDGAANSRPTQGADPAAVAAAGGVDPNAAAPAGGDWRTLLPPEARSRIVNKIMEALKKHRPVSAPEELSELQKIAVRFEEKIYTAATNPIAEYPRRSTRRSLTASPSPRTSSTSRSSRKALKTELLMIQPISGPKIHGNGVKALD
Length145
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.03
Grand average of hydropathy-0.529
Instability index62.62
Isoelectric point10.21
Molecular weight15419.37
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21717
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.19|      17|      17|      84|     100|       1
---------------------------------------------------------------------------
   84-  100 (30.15/15.53)	TAATNPIAEYPRRSTRR
  103-  119 (29.04/14.73)	TASPSPRTSSTSRSSRK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21717 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDGAANSRPTQGADPAAVAAAGGVDPNAAAPAGGDWRTLLP
2) TNPIAEYPRRSTRRSLTASPSPRTSSTSRSSRKALKTE
1
87
41
124










Molecular Recognition Features






MoRF SequenceStartStop




1) DPAAVAAAGGVD
2) ELQKIAVRFEEKIYTAATNPIAEYPRRSTRRSLTASPS
3) GDWRTLLPPEARSRIVNKIMEALKKHRPV
4) RSSRKALKTELLMIQPISGPKIHGN
14
70
34
115
25
107
62
139