<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21700

Description Uncharacterized protein
SequenceMAAEERRLVIAVEGTAALGPYWPAILGDYVEKIVRSLCASELPGKKLAGAPPELALVVFHTRGPYSAFCVQRSGWTKDIDAFLSWLSGISFTGGGLSEAATCEGLTEALMILHGSRNTTQNNQNQEAHKHCILVAASNPYPLPTPVYCLPIRSTDHRKNIESSKEPSIADAETFAKLFPQCSVSLSVISPKQLPTLKAIYNAGKRNPQAADPPVDHAKNPQFLVLLSENFMEARTALSLPLRGNLAPNQTKLKMDSAFANLSVSGPMIGCKPVGVVGISTATVNVEPATIPAMISSSQLGQGGVGASGLGPTAISSVPAMTPTPGIAQQAGANFLGVTNNFDINMPIGQHPNAQQPPSKFVKIWEGTLTALRQGQSVFICKLEGYRSGASSEKLAADWPDTMQIVSLINQEDMNDKKYAGKAEFLVFRSLNRHGFLRQLKKKKLCAVIQLPSQTLLLSVSGIEGRLIGILFPRDVVEYRPSNQPQIQQPQAILLQQPLHQKQHQQS
Length506
PositionUnknown
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.06
Grand average of hydropathy-0.123
Instability index43.22
Isoelectric point9.02
Molecular weight54494.07
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21700
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.08|      23|      25|     290|     312|       1
---------------------------------------------------------------------------
  263-  281 (25.86/ 9.84)	....VSGPMIGCKPVGVVGISTA
  290-  312 (40.65/18.85)	IPAMISSSQLGQGGVGASGLGPT
  317-  338 (38.57/17.58)	VPAMTPTPGIAQQA.GANFLGVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.18|      17|      43|     165|     186|       2
---------------------------------------------------------------------------
  165-  186 (24.52/29.92)	EPSIADAETfaklfPQCSVSLS
  211-  227 (31.65/22.18)	DPPVDHAKN.....PQFLVLLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.87|      19|      43|       1|      21|       3
---------------------------------------------------------------------------
    1-   21 (28.01/24.60)	MAAEERRLVIAVEGTAalGPY
   47-   65 (34.86/23.73)	LAGAPPELALVVFHTR..GPY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21700 with Med25 domain of Kingdom Viridiplantae
Unable to open file!