<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21699

Description Uncharacterized protein
SequenceMAGRTLTRKPTARRPPGQTAPRQHGPKSRTKQPQQHTDMATATAGSSSPPTPHADDSPEPSLAGEKVYVAVGTEVAESRATLLWALHKFPRGAGAGAASFVLIHVYSPPKFLPCLGARVPAAQVEEQELAAYKEMELQRVNDSLDQYLHLCAQGKIHAEKLVVESDDVAQGLVELISEHHVTTLVMGAAADKHYTKKMKTLKSRKARFVEQQAHPLCKVWFICKGTLIYRRKAVQLSHEEMQECRQSSGVRHYSVEKSASLSEMWCVANTWLCKSIGEPQIERTKSDPLYISGKDNIEESCEPYYNFQNILRELENARQEAYEEKCRHVKAERELFEALQKAQASENSYFREMKQKNELEEKLTTIMEEFESLTVRVDELCAELQGEREQRMVLEKRGEHADRIIKDLMLQRDKALRETETLRARKGESTATEEGMMHITEFPYSEIKEATNDFDHSMKIGESVYGSVYKGFLRHTNVAIKKLNPETTQTQSQFSQEVEILSRVRHPNLVTLIGACKDAQALVYEYMPNGSLDDRLACKDNSKPLSWQLRTRIASNICSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVSQILTDQFKATTTLYRHTHPKGSFVYIDPEYLISGDLTPLSDVYSFGIVLLRLLTGRSGFGLLKEVQQAMEKGCLQAILDSSAGEWPAMYAEQLAGLGLRCCKIRRKNRPDLQTEVWTVLEPMYRSASVMLCSLSFKSVSEDLGGVPSYFICPILQDVMRDPLIAADGFTYEAEAIREWLDSGHGTSPMTNLELPHRDLLPNHALRSAIQEWLHTYGD
Length815
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.07
Grand average of hydropathy-0.450
Instability index45.97
Isoelectric point6.43
Molecular weight91730.43
Publications
PubMed=22580951

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21699
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.36|      19|      19|     567|     585|       1
---------------------------------------------------------------------------
  543-  565 (19.84/10.97)	.KPLSWqlrtrIASNICSALIFLH
  567-  585 (31.99/22.05)	NKPHSI.....VHSDLKASNILLD
  587-  603 (25.53/16.15)	NNVAKL.......SGFGVSQILTD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.91|      29|     251|     500|     530|       2
---------------------------------------------------------------------------
  500-  530 (44.43/45.76)	ILSRV.RHPnLVTLIGACKDAQAlVYEYMPNG
  751-  780 (47.48/37.01)	ILQDVmRDP.LIAADGFTYEAEA.IREWLDSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.80|      20|      22|     312|     332|       3
---------------------------------------------------------------------------
  298-  321 (30.14/20.59)	EESCEPYynfqNILRELENARQEA
  323-  342 (34.66/18.49)	EEKCRHV....KAERELFEALQKA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21699 with Med32 domain of Kingdom Viridiplantae
Unable to open file!