<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21698

Description Uncharacterized protein
SequenceMNSKQRAEDPSRESSNKLQKRVTAMNRDLPPRDEQFISDYEQLRMQYPDQDQLQAVTESVLISFVLQCSSHAPQSEFLLFATRCLCARGHLRWDNLLPSLLNAVSSMEAPMGQGVPVTGGGPVTPSSSAMAMPNAPNFHPSNPASPLSVMNTIGSPTQSGVDQPVGANVSPIKAAEFSSAAQLSAAARGDQSRRGAEIGYLHLLSCRIILAGLESNLKPATHAVIFQHMVNWLVNWDQRPHSMDEADAMQTWRMEKPLHEWMHLCLDVIWILVNEEKCRIPFYELVRCNLQFLENIPDDEALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFATHRFLSQSYPSIAGESVTNLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSQSQQSSTPGAVFSPDMIGEAVADRTIELLRLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSDQQILRSNHVTWLLAQIIRIEIVMNSLSSDPRKVETTRKIISFHKEDKSLDANNIGPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFTNLDERATGMFWVLSFTMAQPACEAVMNWFTSAGMADLIQGPNMQPNERIMMMRETYPLSMSLLSGLAINLCMKLAFQLEETIFLGQAVPSIAMVETYVRLLLIAPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLKDFFFVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMIYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQFEVQRGHLAQDLLSKAITNLSFFIWTHELLPLDILLLALIDRDDDPYALRIVISLLEKPELQQRVKAFCSSRSPEHWLKNQHPKRVELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSSLLAFHPLRFTFVRDILAYFYGHLPIKLIGRILNLLGVSTKTPFSESFAKYLVSSNSSVCPPPEYFANLLLNLVNNVIPPLSSKSKSNPADTTRSTFNKHHASSQAGGIGNTDGQRAFYQNQDPGSYTQLVLETAAIEILSLPVSAAQIVSSLVQIIAHVQAMLIQSNSGQGMSGGLGQSSGLPTSPSGGGAESAGPNQANSAASGINATNFVSRSGYSSQQLSVLMIQACGLLLAQLPPEFHMQLYSEAARVIKDCWWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPQEWLESTHTVIKHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQVPNPVDASEITDIIDFLHHAVMYEGQGGPVQSTSKPKLEILTLCGKVIEILRPDVQHLLSHLKTDPNCSIYAATHPKLVQNTS
Length1566
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.08
Grand average of hydropathy-0.079
Instability index45.92
Isoelectric point6.76
Molecular weight175875.68
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21698
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.31|      24|     182|    1330|    1355|       1
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 1330- 1355 (38.39/37.39)	SSQQLSVLMIqaCGLLLAQLPPEF.HM
 1517- 1541 (36.92/27.73)	SKPKLEILTL..CGKVIEILRPDVqHL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     171.44|      56|     182|    1047|    1118|       2
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  983- 1046 (85.86/61.82)	LSKAITN.LSffiWTHELLP.LDILLLALIdrdddPYALRIVISLLEK..PELQQRVKAFCSSRSPEH
 1058- 1117 (85.58/66.79)	LQKALGNhLS...WKDRYPPfFDDIAARLL.....PVIPLIIYRLIENdaTDIADRVLAFYSSLLAFH
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.96|      17|      17|    1157|    1173|       3
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 1157- 1173 (31.40/23.82)	ESFAKYLVSSNSSVCPP
 1175- 1191 (30.56/22.94)	EYFANLLLNLVNNVIPP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.64|      13|      17|     336|     348|       4
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  336-  348 (24.35/12.04)	RFLSQSYPSIAGE
  354-  366 (25.28/12.76)	RYSPITYPSVLGE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.44|      25|     191|     259|     286|       5
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  259-  286 (35.91/36.56)	HEWMhLCLDVIWILVnEEKCrIPFYELV
  456-  480 (47.53/30.30)	QDWL.LFADIFFFLM.KSGC.IDFLDFV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     181.46|      59|     191|     689|     750|       6
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  689-  750 (91.26/67.19)	GQAVPSIAMVETYV...RLLLIAPHSlfRPHFtTLTQRSPSILSK.....SGVSLLL...LEILNYRLLPLYR
  878-  947 (90.19/55.96)	GQAIQAWQQAETTVinqCNQLLSPSA..EPNY.VMTYLSHSFPQHrqylcAGAWMLMnghLEINSANLARVLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.04|      21|     632|     776|     816|      14
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  667-  687 (37.47/12.56)	LSGLAINLCMKLAFQLEETIF
  778-  798 (38.57/44.07)	LFRLAENLCMNLILSLKDFFF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.50|      19|     778|     586|     604|      16
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  586-  604 (38.38/26.94)	DEWW........KQMTKASGERMIDFT
 1367- 1393 (31.11/20.31)	DCWWladssrpvKELDSAVGYALLDPT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.39|      10|      22|     838|     847|      17
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  838-  847 (18.02/ 9.99)	YLQPLLEQIM
  861-  870 (19.37/11.36)	YFPPLIRDFL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.51|      26|     532|     951|     976|      18
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  951-  976 (47.04/32.03)	PEEVTA.NIYTMVDVLLHHIQFEVQRG
 1485- 1511 (44.47/29.87)	PNPVDAsEITDIIDFLHHAVMYEGQGG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21698 with Med23 domain of Kingdom Viridiplantae
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