<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21696

Description Uncharacterized protein
SequenceMEERGGGEHEAWEQPLWSARGSPATSSAGSLADEPDDDAEDKVFVAVPEDVGDGRSTLLWALHNLVRDGSEVVIVHVHSPARAIARMRDHTSMKPEEIKEYRKLKRAKAEKNLNAYVQIAKRTGEDIEVGCEKVIIEMDNVAQGLEELIILHNITELVMGAAADQHFSKEMNTPKSKTALKLMETAVPSCKIWFTCKGHLICTREATESLPAILPSPAKNAPMAPAYSISSQMGSMAPAELEYEVSSSKGYTSSSLVATEMTDWDYLFGDWGMTVYGSSRIDAAANFSGTAALPPIIGDANELTPVLHSPTQESDNVYLLLESAYNQEDEPSVDEEMYGKLQDLCSEAKLLLDQADDKSHKIGKAEMDLHSALERIKESEDSYLQEVSQRKEIEKTFARQRLQIEEMRRRLCTLSDELQDSKKYNLMLEQRITQIKSAAKDHVEEITEYFIKQSCEESKKCQKIEMDLLSTLQRVKEVESLLQNEKAQREYMEEKIARQRTEIEETKRQRDKLYYDFQDAKEQRIRLEQVDASEETNRRRKAERDMLSYLQRIKDLENQQIRQLKKQETMEETMARQKEEIQATKRKLHEIHGKHMAEIKSAVKVHEEKDANSKQLFQELQVKYDKLLHERDTAVIEAKELRQKNKQSASVTNETPYTGFSFVELQKTTNGFDAEFKISEDGFASIYKGFIRNTNVAIKLFHPRSLKGQAKFYQEVAVLSRVRHPNLVTLMGACPDDFALVYEFLPNGSLEDWLSCKKHMPPLTWKVRTRIIGEICSALAFIHSHKPYPIVHGDLNLGNILLDANFVSKVGDLGICHLLRQPDLPTTNLQHHPTKNHKGTLCCMDNGEFKSARELMLWSDVNSFGIIILRLLTGRSKQQIGEIVEEAMEKGNLHSIIDASAGDWPLMQANQMAQLGLRCITLSWGRQPNLAGEVWVVIEQLMKAACLPTGPSRFASPSDAPPPSHFICPIFQEVMSDPHMAADGFTYEAEAIRGWLDAADTSPMTNLRLANRTLTPNKALRSAILEWQQQQNRR
Length1034
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.06
Grand average of hydropathy-0.547
Instability index52.22
Isoelectric point5.68
Molecular weight117190.86
Publications
PubMed=22580951

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21696
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.06|      20|      63|     297|     319|       1
---------------------------------------------------------------------------
  297-  319 (27.95/28.44)	IGDAnELTpvLHSP...TQESDNVYL
  362-  384 (31.10/18.44)	IGKA.EMD..LHSAlerIKESEDSYL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     203.77|      41|      64|     543|     583|       2
---------------------------------------------------------------------------
  407-  445 (20.70/ 8.03)	MRRRLCTlsdeLQDSK....KYNLMLEQRitqiksaakDH..VEE...........
  465-  505 (64.37/40.60)	EMDLLST....LQRVKEVESLLQNEKAQR.........EY..MEEKIARQRTEIEE
  543-  583 (65.82/41.68)	ERDMLSY....LQRIKDLENQQIRQLKKQ.........ET..MEETMARQKEEIQA
  608-  649 (52.88/32.03)	EKDANSK.....QLFQELQVKYDKLLHER.........DTavIEAKELRQKNKQSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.63|      21|     466|     511|     537|       4
---------------------------------------------------------------------------
  335-  356 (32.05/11.83)	EEMYGKLQDlCSEAKLLLDQAD
  511-  531 (36.58/26.99)	DKLYYDFQD.AKEQRIRLEQVD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21696 with Med32 domain of Kingdom Viridiplantae
Unable to open file!