<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21695

Description Uncharacterized protein
SequenceMEGAGGGAIHRRRDTSSSSQYSFRTSVSSAADIIAGDEVEEASPPPVEDRVFVAVPEGVRHGKSILLWALENLAKDGTGVVITHVHCPAQMIPMMGAKLHYTTVNPQRVHDHRKKVRAEAEEKLDEYVKMCIRKKVSCEKLIIDNEDVAKGLEELIALHGITKLVMGAAADKHHSKEANTTVPAISASPASTIASKSSVTSVGNHLRSVTISHSYSESEASSSNGSPGHDLIRSRTEVGMYPSLDAISTPSRVYESDGRPTSTSRSSIDPRGEFGRRSQNSWSDPLRNHDAVTISGSPMLHQMQEPDDEKFPSPSHELENPGINANIYDRFTEALSEAELSKKEAYEESTRRRRAERNMISALQKAEEIENLYQHEIRERKTIEETLVRQAQEIEEMKMQHHAISNELHDVKEQKLALEQQITEMASAIKDHEEKMVANKNLLHVLQTDNEKLQQERDAAVSEAESLRPKNDQKMSMLLPVETLNTEFSYFELQQATQGFDEGLKIGEGGFGSVYKGFLRNTTVAIKLLNPQSMQGQSEFNQEVAVLSRVRHPNLVTLIGACREAFCLVYEFLPNGSLEDRLACTNNTPPLTWQVRTKIICDMCSALIFLHSNQPHPVVHGDLKPGNILLDASFVSKLGDFGICRLLSQSNTARSNATRSITTKLHRTTTPKGTFAYMDPEFLSTGELTPRSDVYSFGIIILRLLTGRPPKRIAEVVEDAMERGELHAILDPTAGSWPFVQANQLAHIGLRCAEMSRRRRPDLAGDVWKVVEPLMKAASLTAGRLSLAPSLDNTHAPSYFVCPIFQEVMTDPHVAADGFTYEAEAIMGWLDSGHDTSPMTNLKLEHCELTPNRALRSAILEWQQQQQLQHRT
Length872
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.05
Grand average of hydropathy-0.467
Instability index53.01
Isoelectric point5.92
Molecular weight96932.33
Publications
PubMed=22580951

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21695
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.96|      25|      25|     346|     370|       1
---------------------------------------------------------------------------
  346-  370 (40.46/23.76)	YEESTRRRRA.ERNMISALQKAEEIE
  373-  398 (36.51/20.78)	YQHEIRERKTiEETLVRQAQEIEEMK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     162.97|      51|     544|      56|     107|       2
---------------------------------------------------------------------------
   56-  107 (89.35/72.03)	PEGVRHGK....SILLWA..LENLAKDGTGVVITHVHCP.AQMIPMMGAKLHYTTvNPQ
  615-  672 (73.61/53.83)	PHPVVHGDlkpgNILLDAsfVSKLGDFGICRLLSQSNTArSNATRSITTKLHRTT.TPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.44|      10|     544|     242|     251|       3
---------------------------------------------------------------------------
  242-  251 (19.08/11.63)	PSLDAISTPS
  789-  798 (20.36/12.93)	PSLDNTHAPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.16|      24|      25|     186|     210|       4
---------------------------------------------------------------------------
  186-  210 (36.94/28.07)	SASPASTIASkSSVTSVGNHL.RSVT
  212-  236 (40.22/25.80)	SHSYSESEAS.SSNGSPGHDLiRSRT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21695 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AADKHHSKEANTTVPAISASPASTIASKSSV
2) AELSKKEAYEESTRRRRAERNMISALQKAEEIENLYQHEIR
3) HLRSVTISHSYSESEASSSNGSPGHDLIRSRTEVGMYPSLDAISTPSRVYESDGRPTSTSRSSIDPRGEFGRRSQNSWSDPLRNHDAVTISGSPMLHQMQEPDDEKFPSPSHELENPGINANIYDRF
4) RKTIEETLVRQAQEIEEMKMQHHAISNELHDVKE
169
338
205
380
199
378
331
413










Molecular Recognition Features






MoRF SequenceStartStop




1) GAGGGAIHRRRD
3
14