<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21694

Description Uncharacterized protein
SequenceMEGAGGGAIHRRRDTSSSSQYSFRTSVSSAADIIAGDEVEEASPPPVEDRVFVAVPEGVRHGKSILLWALENLAKDGTGVVITHVHCPAQMIPMMGAKLHYTTVNPQRVHDHRKKVRAEAEEKLDEYVKMCIRKKVSCEKLIIDNEDVAKGLEELIALHGITKLVMGAAADKHHSKKMNSLKSKTALRLMEAAASSCKIWFICKGHLICTREANTTVPAISASPASTIASKSSVTSVGNHLRSVTISHSYSESEASSSNGSPGHDLIRSRTEVGMYPSLDAISTPSRVYESDGRPTSTSRSSIDPRGEFGRRSQNSWSDPLRNHDAVTISGSPMLHQMQEPDDEKFPSPSHELENPGINANIYDRFTEALSEAELSKKEAYEESTRRRRAERNMISALQKAEEIENLYQHEIRERKTIEETLVRQAQEIEEMKMQHHAISNELHDVKEQKLALEQQITEMASAIKDHEEKMVANKNLLHVLQTDNEKLQQERDAAVSEAESLRPKNDQKMSMLLPVETLNTEFSYFELQQATQGFDEGLKIGEGGFGSVYKGFLRNTTVAIKLLNPQSMQGQSEFNQEVAVLSRVRHPNLVTLIGACREAFCLVYEFLPNGSLEDRLACTNNTPPLTWQVRTKIICDMCSALIFLHSNQPHPVVHGDLKPGNILLDASFVSKLGDFGICRLLSQSNTARSNATRSITTKLHRTTTPKGTFAYMDPEFLSTGELTPRSDVYSFGIIILRLLTGRPPKRIAEVVEDAMERGELHAILDPTAGSWPFVQANQLAHIGLRCAEMSRRRRPDLAGDVWKVVEPLMKAASLTAGRLSLAPSLDNTHAPSYFVCPIFQEVMTDPHVAADGFTYEAEAIMGWLDSGHDTSPMTNLKLEHCELTPNRALRSAILEWQQQQQLQHRT
Length907
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.05
Grand average of hydropathy-0.443
Instability index52.57
Isoelectric point6.18
Molecular weight100855.11
Publications
PubMed=22580951

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21694
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.96|      25|      25|     381|     405|       1
---------------------------------------------------------------------------
  381-  405 (40.46/29.09)	YEESTRRRRA.ERNMISALQKAEEIE
  408-  433 (36.51/25.47)	YQHEIRERKTiEETLVRQAQEIEEMK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.62|      10|     544|     277|     286|       2
---------------------------------------------------------------------------
  277-  286 (19.02/10.60)	PSLDAISTPS
  824-  833 (18.61/10.21)	PSLDNTHAPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.47|      22|      23|     221|     243|       3
---------------------------------------------------------------------------
  221-  243 (33.77/24.96)	SASPASTIASkSSVTSVGNHL.RS
  247-  269 (36.69/22.45)	SHSYSESEAS.SSNGSPGHDLiRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.79|      35|     779|      74|     108|       4
---------------------------------------------------------------------------
   74-  108 (64.16/39.05)	AKDG....TGVVITHVHCPAQMIPMMGAKLHYTTVNPQR
  850-  888 (57.63/34.37)	AADGftyeAEAIMGWLDSGHDTSPMTNLKLEHCELTPNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.68|      13|      22|     158|     170|       8
---------------------------------------------------------------------------
  158-  170 (22.94/15.36)	LHGITKL.VMGAAA
  181-  194 (16.74/ 9.29)	LKSKTALrLMEAAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21694 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AELSKKEAYEESTRRRRAERNMISALQKAEEIENLYQHEIR
2) LDAISTPSRVYESDGRPTSTSRSSIDPRGEFGRRSQNSWSDPLRNHDAVTISGSPMLHQMQEPDDEKFPSPSHELENPGINANIYDRF
3) RKTIEETLVRQAQEIEEMKMQHHAISNELHDVKE
373
279
415
413
366
448










Molecular Recognition Features






MoRF SequenceStartStop




1) GGAIHRRRD
6
14