<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21693

Description Uncharacterized protein
SequenceMQANNNPPRVNWQHHANAIEGSSSKDDFLSSSFLFSLPTQRPNPEANREGMLSLRSSACKIQGTERLQVPWIEKAWRSLCNTQVACRSYLRPGLSAKVKDCDKGHARIYGEGSYNINKMETVPGNRILSQESTHRPCESGSVENNSIHQPTGIDSSTRTYQSNHVVQTDIMRARNQYNYVRTDAGLHQAAPVADSMCTDDKLDAMDDDDILASIDVDRIVMEHYQAMNTPRGSASQNTSTPPGNKCNFNGIDETNLPQELSELCNHQCKLAFCPKAMDHLQEMKNEMIAVADELLDDDGKLNLQRSEELRKKRLHLKKQIQLLEEYMARSSQDEERQRSHSMASTAAIQGHLPPMTPGSTFMMDSSRFQSQVYIRNGPGNSDLCYSPAPYSCSDNLSMPLHSVWREYTPKVIDTNYTEGSADKRWSSTNFPWTKELEAKNRNKFGNRSFRPNQREVINATMSGNDVFVLMPTGGGKSLTYQLPALISEGLTLVVCPLVSLIQDQIMHLSQANIPATYLSASMEWPEQQEILRGLMSCHYKLLYVTPEKIAKSNSLTGLLDNLYSQGHLSRIVIDEAHCVSQWGHDFRPDYKNLGVLKQNFPKTPVLALTATATARVKEDVVQALGLANCIVFRQSFNRPNLRYLLRPKTKKCLEDIDNFIRTNHFKECGIIYCLSRMDCEKVAEKLRECGHSVSHYHGSMDPVDRTRVQKQWSKDKINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLPSSCLLYYQYSDYIRVRHMLTQGVAEQTAPPRGSYSNSNEQALKTHKENLLHMVSYCENDVDCRRLLQLIHFGEMFDPSRCAKTCDNCLKELTWVEKDVTNIARQMVELVTMTGQSHSSSHILEVYRGSVSQNVKKQRHDALPLHGAGKHLAKGDAARIMRHLVTEGILIEDVKKSDNIYGSISSVLKANHSKANELRSGKHSIVLKFPAPDKASKMGKLDASLFPQINKTVQQQSEVDENLSSMLFDALLSLREQIMDECNEGYHAYHIFKKDSLKEMSIRVPRTKEELLEINGIGKAKVKKYGDRVLATIEDFLSKHPNPRRNSSGSGSNEHTEAKKRRGFTASYAGSIADDDFEERTAQSKKRAAKTRSTKQGVSDATSMVHGARCMDADLDGVEVLDDELCSIQKPVASGRVLPKWAPAKAKGSSVPPSNLFQEFGYVK
Length1205
PositionUnknown
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.06
Grand average of hydropathy-0.586
Instability index48.16
Isoelectric point8.40
Molecular weight135319.84
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21693
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     364.84|     111|     141|     625|     763|       1
---------------------------------------------------------------------------
  564-  619 (47.33/44.66)	..................................................................SQGHLSR.IV......IDEAHCVSQW.GHD..........F.....RPDYKnlGVLKQNFPKTpvLALTA....TATARVKED...
  640-  763 (170.01/150.97)	NLRYLLR........PKTKKCLEDIDNFIRTnHfKEcGII....YCLSRMDCEKVAEkLRecghsvSHYHGSM.DP......VDRTRVQKQW.SKDKINIICATVAFgmgINKPDVR..FVIHHSLPKS..IEGYH....QECGRAGRDGLP
  777-  905 (147.50/92.28)	RVRHMLTqgvaeqtaPPRGSYSNSNEQALKT.H.KE.NLLhmvsYCENDVDCRRLLQ.LI.......HF.GEMfDPsrcaktCDNCLKELTWvEKDVTNIARQMVEL...VTMTGQ......SHSSSHI..LEVYRgsvsQNVKKQRHDALP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     185.00|      58|      96|     371|     435|       2
---------------------------------------------------------------------------
  371-  435 (97.48/72.75)	QVYI..RNGPGNSdLCYSpAPYSCSDNLSM...PLHSVWREYTPKVIDTNY..TEGSADKRWsstnfPWTKE
  465-  529 (87.52/48.37)	DVFVlmPTGGGKS.LTYQ.LPALISEGLTLvvcPLVSLIQDQIMHLSQANIpaTYLSASMEW.....PEQQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.38|      36|    1086|      79|     114|       4
---------------------------------------------------------------------------
   79-  114 (66.08/47.38)	LCNTQ..VACRSYLRPGLSAKVKDCDKGHARIYGEGSY
 1166- 1203 (60.30/42.51)	LCSIQkpVASGRVLPKWAPAKAKGSSVPPSNLFQEFGY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.35|      43|     756|     256|     299|       8
---------------------------------------------------------------------------
  256-  299 (72.63/44.38)	LPQELSELCNHQCKlAFCPKAMDHLQEMKNEMIAVADELLDDDG
 1015- 1057 (74.72/41.90)	LREQIMDECNEGYH.AYHIFKKDSLKEMSIRVPRTKEELLEING
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21693 with Med34 domain of Kingdom Viridiplantae
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