<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21688

Description Uncharacterized protein
SequenceMTSHPDQRMLECIKMLAHSELISWTDFLRTITGFAHFQKSRCVVALCALLESELPQLQCPFSHISDCLAMTEAVIDVFVWIVEGIQASRELDDFEVVDVEGALFQTFTVFLSDPFVFRLMSLATKKYGGIIKSSIINRLDELQCQDGVTLNYEELQNAFQRIFDPPKYESSELTIKYNFRRSGIRSLTAVFSCFRVLAAVEEVADTMLLFGQINAISHHEIVSDMLHASFMILLEEQETRDNCKSSIEMFFYVKMPRVWAAMIKLGMQPESVVRGVQHMVSECRQVIDNVDSIVKDNTIRAIVRQLISERVMSDADGDKLIAQRNEQLKMIQGLACLTRDDVQRQTQVAVVLSAVQARHVIDKLWNMQEKLMTVLTRLIGSGGYAFDAFCSSYGLEGTLAEMSSKLASLNLLSESPSNVCVDRNMTFDLSFTMLTRIVYKYSNLTLDELVRDPRGGPDNTACAFYQWSSRYVKRISCHSQDHADSDLPIIPPELKAAYKDRVLRLKERQLFWDPHTCNYGQLLHEMPIVGEVILDCFKERKHIEEDVSVGHTEIPFPFVVNLRIFAAFRKANCLLVCIIQWLECQAPSEARRQMARCIKMVLEESVPDEKEEKDRWLFTRMVCRRQLDEMCECDSVIPPMTITLMAIAKRSFPTLHRRQVPDKEMLKKAWLYAQRQNWASPNVLHLIDHCNRAGAHKSWFEFYMHHMMKLRCPDVMNRAIETICACLLLEPQETLITACVLMVDFMMDKKGQVQFEVPYVIPLVKLLTQVMLMSVWIIDREYKRVNAWRSGEPRQKRVKIANDSQIHPSIKILQETIEVAVNKFVKESSQGSLYQPISSVCHIVRMIAGAPQSEAKQLLLPYLKHLLFFQLARLEPGSISFELFATFCDPANEDHDLEKLKFLCLLRKSGGL
Length912
PositionTail
OrganismAncylostoma caninum (Dog hookworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Ancylostomatoidea> Ancylostomatidae> Ancylostomatinae> Ancylostoma.
Aromaticity0.08
Grand average of hydropathy-0.046
Instability index51.30
Isoelectric point6.30
Molecular weight104748.90
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21688
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     227.07|      54|      58|     439|     494|       1
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  439-  494 (93.28/66.39)	YKYSNLTLDE..LVRDPRGGPDntACAFYQW..SSRYVKRI..SC.HSQ..DHADSDLPIIPPEL
  498-  554 (67.72/41.69)	YKDRVLRLKErqLFWDPH......TCNYGQLlhEMPIVGEVilDCfKER..KHIEEDVSVGHTEI
  595-  639 (66.07/40.49)	ARCIKMVLEE..SVPDEKEEKD.......RW.....LFTRM..VC.RRQldEMCECD.SVIPP..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.49|      37|     493|     375|     415|       3
---------------------------------------------------------------------------
  375-  415 (59.09/52.73)	LTRL.IGSGGYA.FDAFCSSYGLEGTLaemsSKLASLNLLSES
  871-  909 (58.40/41.47)	LARLePGSISFElFATFCDPANEDHDL....EKLKFLCLLRKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.10|      29|     442|     114|     145|       4
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  114-  145 (46.11/37.06)	PFVFRLMSLATKKYGGIIKSSIINRLDelqCQ
  557-  585 (53.98/35.25)	PFVVNLRIFAAFRKANCLLVCIIQWLE...CQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.34|      41|     694|      42|      83|       5
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   42-   83 (67.37/55.02)	CVVaLCALLESELPQLQCPFSHISDCLAMTEAVIDVFVWIVE
  739-  779 (66.96/49.54)	CVL.MVDFMMDKKGQVQFEVPYVIPLVKLLTQVMLMSVWIID
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21688 with Med24 domain of Kingdom Metazoa
Unable to open file!