<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21687

Description "ATPase, AAA family"
SequenceMNEKVFFTRHLKDDHKERKRDDDKELHDAIAATACRAMEFVSSNAKPKKTKGWERKGLASLSDFKMASGSQVVKEMKQVICESQTITNSGSSAHEDGSNMDGAQAPKRYLGNKKITPSFNVPPMIRKGLEMMDVNGGSGAKTTGSGLRSEPTLKHFDENIISLIESEIMSVTHETGWADVAGLDGAKKALREIVVLPFKRPDMFKGIRAPPKGVLLFGPPGTGKTMIGRCVASQCKATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEVDSLLSARSETEHESSRRIKTEFLVQLDGVATNSDERLLVLAATNRPQELDEAARRRFVKRLYIALPEAEARLTIVKNLLSDMKHNLEDADFDEVAKLTEGTRLYFKSKVPLLTFWFLGYSGADMRQLCAEAAMGPIRDIDNCSSMDIETIEAEEMIRADRRPNVATPVSRYRGTVGAPVDGHVRYNASPSMAVRPTAQEGCQLVNHFEFAKGASAVVSVLRLLAQLRLEVNKWYEAFFNSDSKNSNNLTEQDVTKRLTSLYSDLEKLVKAVDMRRPDSVPLRVLSTIYDEAAGLPASNSPVDEESYRECVEAAAVYQEFAQAYFDSTQRQEVARALRNMSHLGPDRLRTVPVEKMHAQFLAVLRALKANEHRLIDMHKWRVSAVIEMPFLETLIEVEFGRLRDERFVAQLKAALLIRQGELVSVSLGSPRETLWAKDDDVSSRYEVFRKMSSLASYRLFSTYSHTKMQNFQTVSMVFGFLQLYTLSFSLPCCGCHKVMRDYLPPMVLTDFNQFRPSFFHENCLV
Length803
PositionTail
OrganismAncylostoma caninum (Dog hookworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Ancylostomatoidea> Ancylostomatidae> Ancylostomatinae> Ancylostoma.
Aromaticity0.08
Grand average of hydropathy-0.304
Instability index42.68
Isoelectric point8.41
Molecular weight90132.24
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21687
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.52|      27|      29|     611|     639|       1
---------------------------------------------------------------------------
  611-  639 (42.94/33.67)	VARALRNMSH..LGPDRLRTVPVEKMhaQFL
  641-  669 (43.57/27.26)	VLRALKANEHrlIDMHKWRVSAVIEM..PFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.32|      22|      44|      88|     109|       2
---------------------------------------------------------------------------
   88-  109 (39.07/21.80)	NSGSSAHEDGSNMDGAQAPKRY
  135-  156 (36.73/20.11)	NGGSGAKTTGSGLRSEPTLKHF
  171-  186 (19.51/ 7.69)	VTHETGWADVAGLDGA......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     204.69|      67|     352|     329|     406|       3
---------------------------------------------------------------------------
  329-  406 (94.57/99.46)	DEaarrRFVKRLYIALPEAEARLTIVKnlLSDMKHNLEDADfDEVAKLTEgtrlYFKSKVPLLTF.WFLGYSGADMRQL
  682-  749 (110.12/79.75)	DE....RFVAQLKAALLIRQGELVSVS..LGSPRETLWAKD.DDVSSRYE....VFRKMSSLASYrLFSTYSHTKMQNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.14|      46|     286|     247|     295|       6
---------------------------------------------------------------------------
  247-  295 (64.63/61.43)	LTSKWvGEGEKLVRALfSVAR.....LKLPSVIFiDEVDSLLSARSETEHESSR
  536-  586 (72.52/52.41)	LTSLY.SDLEKLVKAV.DMRRpdsvpLRVLSTIY.DEAAGLPASNSPVDEESYR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21687 with Med27 domain of Kingdom Metazoa
Unable to open file!