<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21685

Description Uncharacterized protein
SequenceMSGQQGGYGQPPNMQQQQMMYNQQHMMGRPMGQMGVQRQMYGQDSGMPQQQGQMQMHFAPQQQQMQMGQPQMNQMPQLQQQQPQQQGMGHQQPMQMGLQQQLGGQQMGMQQQQMVQQQQMGQQQQPVQQQPHSQQGQPPMGQQSMLSGQTQLGSMLGGSLGSVSQQHMQMQQPRSPMTTGSVGPQQLTPGGGPGSQAPGSTLAAASAGGPTSVGPMSVQPHTPMNPASQQTLAQPSSVQPGPASVAPATPASNQPAPQASSSTAVEPTHPYLQDPVAHSKQLIMKDLRFSIIDLNRRAGEALKDLRAGNTPSNSNEYLKAMDNLFAVCDEIEGNLILVCETQKQMSKMEKIFDKDAMRAGEQHVGFSDLKGRHMGGDDDSGAHLSAVNTYIDQTKQLQAAFDRAFSHVGRTLETIRRRQNMGSKIPKIEGIMDMDC
Length436
PositionTail
OrganismAncylostoma caninum (Dog hookworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Ancylostomatoidea> Ancylostomatidae> Ancylostomatinae> Ancylostoma.
Aromaticity0.03
Grand average of hydropathy-0.822
Instability index65.49
Isoelectric point6.86
Molecular weight47412.01
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21685
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     135.67|      31|      46|      81|     126|       3
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   20-   46 (39.15/ 7.01)	MYNQ.QHM...MG..RPMgQMGVQRQMYG...........QDSG..................
   81-  126 (54.37/14.99)	QQPQ.QQG...MGhQQPM.QMGLQQQLGG...........QQMGMqqqqmvqqqqmgqqQQP
  129-  173 (42.15/ 8.13)	QQPHsQQGqppMG.QQSM.LSG.QTQLGSmlggslgsvsqQHMQM..............QQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.46|      27|      61|     175|     210|       5
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  175-  208 (37.70/24.87)	SPmttGSVGPQqlTPGGG.PGSQAPGSTlaAASAG
  241-  268 (43.77/20.64)	GP...ASVAPA..TPASNqPAPQASSST..AVEPT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21685 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MSGQQGGYGQPPNMQQQQMMYNQQHMMGRPMGQMGVQRQMYGQDSGMPQQQGQMQMHFAPQQQQMQMGQPQMNQMPQLQQQQPQQQGMGHQQPMQMGLQQQLGGQQMGMQQQQMVQQQQMGQQQQPVQQQPHSQQGQPPMGQQSMLSGQTQLGSMLGGSLGSVSQQHMQMQQPRSPMTTGSVGPQQLTPGGGPGSQAPGSTLAAASAGGPTSVGPMSVQPHTPMNPASQQTLAQPSSVQPGPASVAPATPASNQPAPQASSSTAVEPTHPYLQDPVA
1
277










Molecular Recognition Features






MoRF SequenceStartStop




1) VQRQMYGQD
36
44