<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21684

Description Uncharacterized protein
SequenceMSGQQGGYGQPPNMQQQQMMYNQQHMMGRPMGQMGVQRQMYGQDSGMPQQQGQMQMHFAPQQQQMQMGQPQMNQMPQLQQQQPQQQGMGFRNLCTNVTNLLKLGSMLGGSLGSVSQQHMQMQQPRSPMTTGSVGPQQLTPGGGPGSQAPGSTLAAASAGGPTSVGPMSVQPHTPMNPASQQTLAQPSSVQPGPASVAPATPASNQPAPQASSSTAVEPTHPYLQDPVAHSKQLIMKDLRFSIIDLNRRAGEALKDLRAGNTPSNSNEYLKAMDNLFAVCDEIEGNLILVCETQKQMSKMEKIFDKDAMRAGEQHVGFSDLKGRHMGGDDDSGAHLSAVNTYIDQTKQLQAAFDRAFSHVGRTLETIRRRQNMGSKIPKIEGIMDMDC
Length387
PositionTail
OrganismAncylostoma caninum (Dog hookworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Ancylostomatoidea> Ancylostomatidae> Ancylostomatinae> Ancylostoma.
Aromaticity0.04
Grand average of hydropathy-0.690
Instability index58.98
Isoelectric point7.75
Molecular weight41920.02
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21684
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     171.62|      29|      31|      30|      58|       1
---------------------------------------------------------------------------
    1-   21 (35.90/ 8.48)	.......MSGQQGGYGQPPNMQ...QQQ.....MMY
   30-   58 (61.06/19.38)	PMG...QMGVQRQMYGQDSGMP...QQQGQMQ.MHF
   60-   90 (35.81/ 8.45)	PQQqqmQMG.QPQM.NQ...MPqlqQQQPQQQgMGF
   97-  125 (38.85/ 9.76)	VTN...LLKLGSMLGGSLGSVS...QQHMQMQ.QPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     129.53|      32|      60|     126|     162|       2
---------------------------------------------------------------------------
  126-  160 (46.88/28.62)	S..PmTTGSVGP...QQLTPGGG.PGSQAPGSTLAaasAGG.
  161-  186 (38.43/15.42)	......PTSVGPmsvQPHTPMN..PASQ...QTLA.....QP
  188-  218 (44.21/20.31)	SvqP.GPASVAP...A..TPASNqPAPQASSST.....AVEP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21684 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MSGQQGGYGQPPNMQQQQMMYNQQHMMGRPMGQMGVQRQMYGQDSGMPQQQGQMQMHFAPQQQQMQMGQPQMNQMPQLQQQQPQQQGMGFRNLCT
2) SMLGGSLGSVSQQHMQMQQPRSPMTTGSVGPQQLTPGGGPGSQAPGSTLAAASAGGPTSVGPMSVQPHTPMNPASQQTLAQPSSVQPGPASVAPATPASNQPAPQASSSTAVEPTHPYLQDPVA
1
105
95
228










Molecular Recognition Features






MoRF SequenceStartStop




NANANA