<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21667

Description Uncharacterized protein
SequenceMGGSSASSSSWQGMYSGEERQKVVQIIINTLTELNGTNPNLNQQKLAKMAQDFERLVYEKSLSKEDYLRAIKLKVHQLRLQKQQMAASQGGQPLNPQQQQQQQQQVPPQQQQMPQQVPRTNNNMNQMNTQNMQFLQQQAQARNQSQAQIQARQQQLRNMVNQQQQQQQQQQQQQSQQPVLQPQLLLQQDMPPQQTQQPGGGQTAPPPPQQNQLPPHLVNLMRTSPIPPPLLNKMPKLPNGVNTWNQIFDLIRKEVIPRDMVPAIRDIHGMHLQLFMRQHQQQKMNMQRSMNDGSVNNVENLQLGLNTNLMGNMPNNFNNLTPQQREQILRQRRLQQQQQQQQQQQMQPQKQNAQAQVAPTQSLQQQQQQQPQQPQAPQQIPQPMVQQNQNLQMGQQLNVPQQNIPPNQQRPPQFQVTAEDYAKYNNEALVFLSKLQQQKQWPGQIDQQMKETFIRKFILHQKTLQWKQQQAQQAQLQQRGGANNLGMNAGQPTGGAQPPQPPAQTQRQQQQQSVGQMSMPPQANLQNQPPQQQQQQQQQGGQQPLVQQPMGGMVQGLPVMSNMATPLMQPNAQLNANISSPLMAQRMNNNNNNNNNSGAAMPPAANNNNNNNNRARPVTAPANISMSSIIPPLTDEVKLKLRLLIEEVSRDNVVLRDVTTLLSPQDKTTVRESMNQIQKQYGNVDSVISYFYLLTRNGDGTKRLIQMKYMTKNILENLHRGIYLAAPDLLEKVKSQYAKYFDYVREQINTRRQQALQQAAAGGPGVSQPQPQPQPQQQQQQQQQQQPQLGQQPGMPRLQPPQGQQQQQPMMQNQVRNQQFMNQNPQMAMQQQQQQPMMGQQDQMNMNSWQGVPGAGPNANQMKITPQPTQQQQLRQGINSSPLMPQQPTPMLLQQQPMPGPQQMPMQPQPPIAKPTAAQKAPAKTTVKKGTQGRKKSKANNNAGTAPTPAAMPAATPGALANAIKTPHSIPTPQIPPQSHSNKNTPSAHSPAYPVKATPSGATPGTSNFGGSNANNVYPTPEIDVFAMSSNDSKVAKRRELLNTDPEKFFYASLANLLDLDESIVENVKVSPRMSNGKAAANSPLSPKVTGEWTSDVKPMAITTSFRQVETIKELTSDDIIASCGMLAIQEVEEPKLVKREREQDDELDTLFNDKKLKLEDGNNFDKFLYEPASFDEWKDFVVSFIQ
Length1187
PositionTail
OrganismCandida viswanathii
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Debaryomycetaceae> Candida/Lodderomyces clade> Candida.
Aromaticity0.04
Grand average of hydropathy-0.998
Instability index72.02
Isoelectric point9.83
Molecular weight133658.30
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21667
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.82|      20|      20|     337|     356|       1
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  164-  183 (38.22/ 6.45)	QQQQQQQQQQQSQQPVLQPQ
  337-  356 (42.60/ 8.20)	QQQQQQQQQMQPQKQNAQAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.69|      23|      24|     799|     822|       2
---------------------------------------------------------------------------
  777-  801 (41.62/ 8.50)	QQQQQQQQ.QQPQLGQQPGMPrlQPP
  802-  825 (43.07/12.03)	QGQQQQQPmMQNQVRNQQFMN..QNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     380.85|      58|     264|      93|     150|       5
---------------------------------------------------------------------------
   37-  119 (68.20/12.86)	TNP.....NLNQ......QK...LAKMAQdferlvyEKSLSKED.ylraIK.....lkvhqlrlqkqqmaasqggqP...LNPQQQQQ......................QQQQVP.PQQ....QQMP.......QQVPR
  120-  205 (73.10/14.44)	TNN.....NMNQMNTQNMQF...LQQQAQ.......ARNQSQAQ.....IQ.....................arqqQ...LRNMVNQQqqqqqqqqqqqsqqpvlqpqllLQQDMP.PQQ....TQQP....gggQTAP.
  239-  297 (57.16/ 9.30)	..N.....GVNTWN.QIFDL...IRKEVI.......PRDMVPAI.....RD.....................ihgmH...LQLFMRQH......................QQQKMN.MQR....SMND.......GSVNN
  298-  381 (62.88/11.14)	VENlqlglNTNLMGNMPNNF...NNLTPQ.......QREQILRQ.....RRlqqqqqqqqqqqmqpqkqnaqaqvaP...TQSLQQQQ......................QQQ....PQQ....PQAP.......QQIP.
  417-  482 (57.23/ 9.32)	TAE.....DYAKYNNEALVFlskLQQQKQ.......WPGQIDQQmketfIR.........................K.fiLHQKTLQW......................KQQQ...AQQ....AQLQ.......QRGGA
  855-  923 (62.29/10.95)	AGP.....NANQMKITP.QP...TQQQ.Q....................LR.........................QginSSPLMPQQ................ptpmllQQQPMPgPQQmpmqPQPPiakptaaQKAPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.64|      11|      15|     943|     953|       7
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  943-  953 (21.01/12.05)	AGTAPTPAAMP
  961-  971 (18.63/ 9.69)	ANAIKTPHSIP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21667 with Med15 domain of Kingdom Fungi
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