<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21664
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MADETLSLSKLLEKAVTQKLQPKLFISLFNQLGKRKPIQPNELVSELLNIKPDNNSLKQRKWNEYQVNVVIELSFSSVENNHLFWTNLDLANESSQCTYLLKLSRTLTGPQHYEKDVLKNFISVEFMDYVLKHIRGEKFSDKVVEHIVFLFAVIVQKFDKFIEEKTSGAVLDFIVNFIRILRSLTGNDNLSSVLLLKSKKILSKAQIEQLESTRHAKMERQGSIISLSPNVQANVASLTMINKLDEFYFRMRYIWVHKTFRHFNFNDTLNFFVNNLVAAPNQKNSYLIAHDFIKALLSGLDMDGYALFNVKNFLLTRAPHLLGNLRYGEDNLEKAVNDALQNVEIDNDFKQRFVKAFDFPDEPMLQFRDKFNDKLLNVNSEFTSLEESGLVELVNALPKLCQLSKTQQEVTQVILDIVDELGYSRDFEKLNRLLLTAMNNVELVNIVLFNSNLSLLYKLLDLIDSSNFRIHDDDENFQDHYSYCGIIMLSILTIVQNFQIDLSEVTVKDSFIINYLNEFYYRSCDNLTNATPVNSDEEDKIIVENYQNLLNEWITALFDDKNEGLSDDLIKSLSIKQIYKLVPLIYKQGIVAADLNKIDWGILSNGLEYLSQPFLTPIVPIIIKSLVRDCNIDFGLKLRIIKEMINDTSNPITKLVISICGNDIIKLNPPVELKEHVQQNVHYVDVAEPFPRDYNVKDAFRSQLLGETSLLSKFITTYVLGNRGDVVNSLIQEIYNFQKSNHEDSKMFINLMVFIVLLDSIETRQDRDYWKRELPSSCKTTVQKSSEPFFEASMDHHYSSIFNDPSSNSSFGQQQDGLDGMNDFLKGVGGDDDDQMMQDDDLFNEKPKTSDQLQNLLQKAQHHLCLINQFRKKRGDLLNNALFGKSVSLLNDKLVEEMTNWRF |
Length | 903 |
Position | Tail |
Organism | Candida viswanathii |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Debaryomycetaceae> Candida/Lodderomyces clade> Candida.
|
Aromaticity | 0.10 |
Grand average of hydropathy | -0.248 |
Instability index | 30.52 |
Isoelectric point | 5.27 |
Molecular weight | 104178.74 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP21664
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 265.20| 84| 121| 127| 211| 1
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127- 207 (117.38/64.46) ...........................................MDY..VLKH.................................IRGEKFSDKV...............VEHIVFLFAVIVQKFDKFIE.EKTSGAVLDFIVNFIRILrSLTGN....D..NLSSVLLLKSKKILSKAQI
208- 327 (103.80/53.10) EQLEstrhakmerqgsiislspnvqanvasltminkldefyfrMRYiwVHKT.................................FRHFNFNDTL...............NFFVNNLVAAPNQKNSYLIA.H.......DFIKALLSGL.DMDGY....AlfNVKNFLLTRAPHLLGNLRY
330- 436 (44.02/18.88) DNLE................................................kavndalqnveidndfkqrfvkafdfpdepmlqFR.DKFNDKLlnvnseftsleesglVELVNAL........PKLCQlSKTQQEVTQVILDIVDEL....GYsrdfE..KLNRLLLT...........
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 92.93| 28| 270| 223| 250| 2
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223- 250 (49.15/33.84) SIISLSPNVQANVASLT.....MINKLDEFYFR
490- 522 (43.78/29.27) SILTIVQNFQIDLSEVTvkdsfIINYLNEFYYR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 91.26| 29| 35| 582| 613| 5
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582- 613 (43.81/42.56) VPLIYKQgiVAADLNkIDWG....ILSNGLEYLSQP
619- 651 (47.45/33.08) VPIIIKS..LVRDCN.IDFGlklrIIKEMINDTSNP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 49.68| 15| 427| 442| 456| 9
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442- 456 (24.67/13.83) ELVNIVLFNSNLSLL
876- 890 (25.01/14.13) DLLNNALFGKSVSLL
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