<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21662

Description Uncharacterized protein
SequenceMGGGSASSSSWQGMYSGEERQKVVQIIINTLTELNGTNPNLNQQKLAKMAQDFERLVYEKSLSKEDYLRAIKLKVHQLRLQKQQMAANQGGQPLNPQQQQQQQQQQQQQQVPPQQQQMPQQVPRTNNNMNQMNTQNMQFLQQQAQARNQSQAQIQARQQQLRNMVNQQQQQQQQQSQQQSQQQQSQQPVLQPQLLLQQDMPPQQTQQPGGGQTAPPPQQNQLPPHLVNLMRTSPIPPPLLNKMPKLPNGVNTWNQIFDLIRKEVIPRDMVPAIRDIHGMHLQLFMRQHQQQKMNMQRSMNDGSVNNVENLQLGLNTNLMGNMPNNFNNLTPQQREQILRQRRLQQQQQQQQQQQMQQQKQNAQAQVAPTQPLQQQPQPQPQPQQQQSQQPQAPQQIPQPMVQQNQNLQMGQQLNVPQQNIPPNQQRPPQFQITAEDYAKYNNEALVFLSKLQQQKQWPGQIDQQMKETFIRKFILHQKTLQWKQQQAQQAQLLQRGGANNLGMNAGQPTGGAQPPQPPAQSQLQQQQQQQQSVGQMSMPPQANLQNQPPQQQGGQQPLVQQPMGGMVQGLPVMSNMTTPLMQPNAQLNANISSPLMGQRMNNNNNNNNSNNNNNNSGAAMPPAANNNNNNNNRARPVTAPANISLNSIIPPLTDEVKLKLRLLIEEVSRDNVVLRDVTTLLSPQDKTTVRESMNQIQKQYGNVDSVISYFYLLTRNGDGTKRLIQMKYMTKNILENLHRGIYLAAPDLLEKVKSQYAKYFDYVREQINTRRQQAIQQAAAGGPGVSQPQPQQQQNQQQPQLGQQPGMPRLQPPQGQQQQQPMMQNQARNQQFMNQNQQMAMQQQQQQQQQQQPMMGQQDQMNMNNWNAVPGAGPNANQMKITPQPTQQQQLRQGINSSPLMPQQPTPMQQQQPMPGPQQQPMPGPQQMPMQPQPPIAKPTAAQKAPAKTTVKKGTQGRKKSKANNNAGTAPTPAAMPAATPGALANAIKTPHSIPTPQIPPQSHSNKNTPSAHSPAYPVKATPSGATPGTGNFGGSNANNVYPTPEIDVFAMSSNDSKVAKRRELLNSDPEKFFYASLANLLDLDESIVENVKVSPRMSNGKAAANSPLSPKVTGEWTSDVKPMAITTSFRQVEAIKELTSDDIIASCGMLAIQEVEEPKLVKREREQDDELDTLFNDKKLKLEDGNNFDKFLYEPASFDEWKDFVVSFIQ
Length1211
PositionTail
OrganismCandida viswanathii
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Debaryomycetaceae> Candida/Lodderomyces clade> Candida.
Aromaticity0.04
Grand average of hydropathy-1.035
Instability index72.68
Isoelectric point9.81
Molecular weight136314.87
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21662
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     617.79|      63|      64|      99|     161|       1
---------------------------------------------------------------------------
   99-  161 (123.68/25.01)	QQQQQQQQ.QQQQVPPQ..........QQQMP....QQV....PRTNNNMNQMNTQNMQFLQQQAQARNQ...SQA..QIQARQQQL
  168-  209 (70.23/ 9.84)	QQQQQQQQ.SQQQ..SQ..........QQQSQ....QPV....LQPQLLL.Q...QDMP..PQQT..................QQPG
  210-  283 (57.87/ 6.33)	GGQTAPPP.QQNQLPPHlvnlmrtspiPPPLL....NKM....PKLPNGVNTWN.QIFDLIRKEVIPRDM...VPAirDIHGMHLQL
  377-  416 (59.57/ 6.82)	QPQPQPQQ.QQ....SQ..........QPQAP....QQI....PQ...PMVQQN.QNLQ.MGQQLNVP...................
  525-  588 (63.40/ 7.91)	QQQQQQQSvGQMSMPPQ.......anlQNQPP....QQQggqqPLVQQPMGGM.VQGLPVMSNMTTPLMQ...PNA..QLN......
  786-  839 (88.88/15.13)	SQPQPQQQ.QNQQ.QPQ..........LGQQP.....GM....PRLQPPQGQQQQQPM....MQNQARNQ........QFMNQNQQM
  842-  908 (86.10/14.35)	QQQQQQQQ.QQQPMMGQ..........QDQMNmnnwNAV....PGAGPNANQMKITP.QPTQQQ.QLR.QginSSP..LMPQQPTPM
  909-  967 (68.07/ 9.23)	QQQQPMPG.PQQQPMPG..........PQQMP..mqPQP....PIAKPTAAQ.KAPAKTTVKKGTQGRKK...SKA..NNNA.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     122.56|      26|      59|     286|     311|       2
---------------------------------------------------------------------------
  286-  311 (44.14/14.12)	RQHQQQKMNMQRSMNDGSVNNV....ENLQ
  348-  373 (45.91/15.04)	QQQQQQQMQQQKQNAQAQVAPT....QPLQ
  453-  481 (32.52/ 8.07)	QQK.QWPGQIDQQMKETFIRKFilhqKTLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.12|      22|      26|     601|     622|       3
---------------------------------------------------------------------------
  601-  622 (44.11/19.88)	NNNNNNNNSNN....NNNNS.GAAMPP
  625-  651 (33.02/13.09)	NNNNNNNNRARpvtaPANISlNSIIPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     107.12|      15|      15|    1027|    1041|       5
---------------------------------------------------------------------------
  980-  994 (20.94/ 7.68)	TPGALANA.IKTPHSI
  996- 1008 (22.01/ 8.46)	TPQIP..P.QSHSNKN
 1009- 1019 (19.33/ 6.50)	TPSA.....HSPAYPV
 1027- 1041 (25.94/11.33)	TPGTGNFG.GSNANNV
 1044- 1059 (18.90/ 6.19)	TPEIDVFAmSSNDSKV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.95|      17|     286|      36|      56|       6
---------------------------------------------------------------------------
   36-   56 (25.12/18.72)	GTNPNLnqqkLAKMAQDFERL
  313-  329 (32.83/15.11)	GLNTNL....MGNMPNNFNNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.93|      11|      15|    1135|    1145|       9
---------------------------------------------------------------------------
 1135- 1145 (16.77/11.40)	AIKELTSDDII
 1152- 1162 (17.16/11.84)	AIQEVEEPKLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.83|      23|     690|      66|      93|      10
---------------------------------------------------------------------------
   66-   93 (29.47/23.18)	DYLRAiklKVHQLRLQKQQMAANqGGqP
  761-  783 (43.36/18.04)	DYVRE...QINTRRQQAIQQAAA.GG.P
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21662 with Med15 domain of Kingdom Fungi
Unable to open file!