<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21624

Description RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit
SequenceMLDRWSLVKSREEDLKYVSENDYVKIRIWFCHLIQKLAKRLQLRQQVVATAFVYFKRFYINNSLRETDPVLVLVTCVYLATKIEECPIHIKMVTQEAKNVFQSEFGGFPYDSSKVAEFEFYLLEELEFYLIVWHPYRSLTQICNELGMRESGLQYAWFIVNDSYRTDVCLLYPPHLIALAAIYLTVVLNHADFAPGSAGDQRDMKQWFADLNVDIKSIIEISQEILAIYEVWADWKEEKMLLLYKKLKKLVKNKSSEQKSKDKRINKQRVMMLCSRGVTYRYRHLLSDLEAMMPHSKKDAKLDTKNNLYILNELADLNNCNNAVFFEVRKKQDLYVWMAKTPNGPSVKFHLQNLHTMDELKMTGNCLKGSRHILSFDKTFDSAPHWSLLKELLGQVFNVPKGSRRSKPFIDHVLSFSIVDNRVWFRNYQIVEKNAQNTPGFNPMDKDDISLVEIGPRFCLTPIRIFEGSFGGPTVYENPEFVHPNFVRSAIRKEKLEKYTKRQKSNFERENRIRMAEESRETEASDKRVFQ
Length531
PositionKinase
OrganismRhizopus stolonifer (Rhizopus nigricans)
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Mucorineae> Rhizopodaceae> Rhizopus.
Aromaticity0.12
Grand average of hydropathy-0.399
Instability index43.49
Isoelectric point8.96
Molecular weight62484.42
Publications
PubMed=29674435

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
rRNA binding	GO:0019843	IEA:InterPro

GO - Biological Process
rRNA processing	GO:0006364	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21624
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.06|      24|      25|     119|     143|       2
---------------------------------------------------------------------------
  109-  134 (37.39/23.51)	PYDS.SKVA.efEFYLLEE.LEF.YLIVWH
  135-  162 (26.74/19.67)	PYRSlTQIC..nELGMRESgLQYaWFIVND
  163-  186 (24.93/13.38)	SYR..TDVCllyPPHLIAL.AAI.YLTV..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.21|      26|      36|     340|     371|       3
---------------------------------------------------------------------------
  340-  371 (38.79/33.15)	KT.PNGPsvkfHLQNLHTMdeLKMTGNCLKGSR
  378-  404 (41.42/21.13)	KTfDSAP....HWSLLKEL..LGQVFNVPKGSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.80|      23|      25|     480|     502|       5
---------------------------------------------------------------------------
  456-  476 (21.39/11.77)	....PRFCLTPIRifEGSFGGPTVY
  480-  502 (38.21/26.91)	EFVHPNFVRSAIR..KEKLEKYTKR
  506-  528 (34.20/23.29)	NFERENRIRMAEE..SRETEASDKR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21624 with CycC domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA