<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21624

Description RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit
SequenceMLDRWSLVKSREEDLKYVSENDYVKIRIWFCHLIQKLAKRLQLRQQVVATAFVYFKRFYINNSLRETDPVLVLVTCVYLATKIEECPIHIKMVTQEAKNVFQSEFGGFPYDSSKVAEFEFYLLEELEFYLIVWHPYRSLTQICNELGMRESGLQYAWFIVNDSYRTDVCLLYPPHLIALAAIYLTVVLNHADFAPGSAGDQRDMKQWFADLNVDIKSIIEISQEILAIYEVWADWKEEKMLLLYKKLKKLVKNKSSEQKSKDKRINKQRVMMLCSRGVTYRYRHLLSDLEAMMPHSKKDAKLDTKNNLYILNELADLNNCNNAVFFEVRKKQDLYVWMAKTPNGPSVKFHLQNLHTMDELKMTGNCLKGSRHILSFDKTFDSAPHWSLLKELLGQVFNVPKGSRRSKPFIDHVLSFSIVDNRVWFRNYQIVEKNAQNTPGFNPMDKDDISLVEIGPRFCLTPIRIFEGSFGGPTVYENPEFVHPNFVRSAIRKEKLEKYTKRQKSNFERENRIRMAEESRETEASDKRVFQ
Length531
PositionKinase
OrganismRhizopus stolonifer (Rhizopus nigricans)
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Mucorineae> Rhizopodaceae> Rhizopus.
Aromaticity0.12
Grand average of hydropathy-0.399
Instability index43.49
Isoelectric point8.96
Molecular weight62484.42
Publications
PubMed=29674435

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
rRNA binding	GO:0019843	IEA:InterPro

GO - Biological Process
rRNA processing	GO:0006364	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21624
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.06|      24|      25|     119|     143|       2
---------------------------------------------------------------------------
  109-  134 (37.39/23.51)	PYDS.SKVA.efEFYLLEE.LEF.YLIVWH
  135-  162 (26.74/19.67)	PYRSlTQIC..nELGMRESgLQYaWFIVND
  163-  186 (24.93/13.38)	SYR..TDVCllyPPHLIAL.AAI.YLTV..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.21|      26|      36|     340|     371|       3
---------------------------------------------------------------------------
  340-  371 (38.79/33.15)	KT.PNGPsvkfHLQNLHTMdeLKMTGNCLKGSR
  378-  404 (41.42/21.13)	KTfDSAP....HWSLLKEL..LGQVFNVPKGSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.80|      23|      25|     480|     502|       5
---------------------------------------------------------------------------
  456-  476 (21.39/11.77)	....PRFCLTPIRifEGSFGGPTVY
  480-  502 (38.21/26.91)	EFVHPNFVRSAIR..KEKLEKYTKR
  506-  528 (34.20/23.29)	NFERENRIRMAEE..SRETEASDKR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21624 with CycC domain of Kingdom Fungi
Unable to open file!