<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21606

Description Mediator of RNA polymerase II transcription subunit 5
SequenceMENPAAAGDAMRAAIEYWCQFVARCVSQRLETDKFEDYVKIVHDQHPLPPVLVADFFLRPQPSDDSSLDPRIPPYLQVLTKLGYVDTPSILKALYKYSSSHAHAEAQKQQLQSSNTETGKDKEKEGENEKDKDKDKEDAQPKKNITRWKSSYWAEEVLFYRLTKSVVEGRAIQDSRSALEVAMIISKFMELFTNALPATAFAADMLEQQFPSGQLRDDMESSRAALVALLLRLCENPILVSAISKPFAKNVRKALSTSLASFLPALQLVPEIADKLELFRTEILASSDPVDKKKQVANAAMDELLDSTVGLENFVVTPISVSNTRAGLYIYLNAALIGRPILDDHALFSYMSNKYGADIQSSAIDLILASFDILANAVFRNEGQKDAHLLRSFLINKLPLLLYQLLPPGFSGTSAEFCITEALSHVDTSLFPTASLMFDESRNNNPYTESIREEFCAACVLHGLVQREHVERILGEISLSYEPSLQKHSKDKLVQDCLSDTDKIQGLVRELDKMDGNVGAVCQALVEVLRQSCHNKETMSLKLLCSQLAAKPQSLDIILLFEKLPNILEPLCQLLDNWRYEEDQGEYQPVYEEFGAILLLVFAFTYRYNLNAVDIGITTPDSWVAKIIARGHIGRQGDELTSREEEHINGWVHGLFDTEAGGLGDELMSSCPPQEFYLVVAPLFQSIVVAYTYGYLNDESLKGGIEYLVDTFLLPSLVPAIRFLADYLWIDQKEQKSIIKILQLILLPSSISGEASTMLSSVKNLIAKPLEHALRTYQRRDPKNQDIEPLLRTLKESIPLSRRTGGTDLNELESWTATPPSGLPSAVKLTIQGLVHWSIHPAMNSMPTSYTHRQILAGLKLLGPRRLLHVILEEVRQHTAAGSANIVYDVATSLICAPDAVKDAPATSMIDANGNMLAPIQRQRTLRDLLKVEVEGCRKLQKEDPVLAEHVVRLHRRVETQMIIPQPQGMLQTADMSLNLADDTAALGDAMAAAASGVQGDNMSVDNLTLDISMGGVSSDMGLGSANGGGNLDPSGDAAMFEGFDTQEIDDFDWNISDSF
Length1060
PositionTail
OrganismFusarium sp. FIESC_28
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Nectriaceae> Fusarium> Fusarium incarnatum-equiseti species complex.
Aromaticity0.07
Grand average of hydropathy-0.147
Instability index45.26
Isoelectric point4.97
Molecular weight117448.63
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21606
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.02|      16|      19|     764|     782|       1
---------------------------------------------------------------------------
  764-  782 (23.91/21.66)	NLIAKPLehaLRTYQRRDP
  784-  799 (28.12/16.20)	NQDIEPL...LRTLKESIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.61|      36|     148|     556|     599|       2
---------------------------------------------------------------------------
  556-  599 (51.04/50.18)	DIILlfekLPNILePLCQLLDN..WRyeeDQGEYQPVYEEFGAILL
  710-  747 (56.57/33.03)	DTFL....LPSLV.PAIRFLADylWI...DQKEQKSIIKILQLILL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.72|      32|     362|     302|     333|       4
---------------------------------------------------------------------------
  302-  333 (56.09/36.57)	DELLDSTVGLENF.VVTPISVSNTRAGLYIYLN
  665-  697 (56.63/36.99)	DELMSSCPPQEFYlVVAPLFQSIVVAYTYGYLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.66|      12|      40|     343|     354|       5
---------------------------------------------------------------------------
  343-  354 (23.25/14.81)	DDHALFSYMSNK
  386-  397 (21.41/13.09)	DAHLLRSFLINK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.93|      16|      25|     809|     824|       9
---------------------------------------------------------------------------
  809-  824 (29.32/18.23)	LNELESWTATPP.SGLP
  831-  847 (26.62/15.84)	IQGLVHWSIHPAmNSMP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21606 with Med5 domain of Kingdom Fungi
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