<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21588
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPLILDNPMPVELNDVDDLFGDGVGLSLPARAQSKQLQQRMDDIRIRGCCQTVAWSRTGSIANITPDGQNLELRFLRRSPDDGSWDLSEPTTCPFVKGLPTIPIVHLVWAGTSSPDLAVIDAVGRVSIVSFSISLNHPFPQRKWDADPTDDVHTVVGAYWLNVSPPNQQASYNVMYGPATKHGNGYTYESSFVHAGGPTHPSPAKSALLTITTHGVIRMFWSQNTNRLEETTMELESISASDELITHASFASEKKHLLLAVATTSKQLKLIRIEIQWGQASQADKATGRPPGNLSPSLIEKHLATTNWLQGGPGDSSLDISMIELSHLEVIPSVVDSTGKNTTPPMVVTARSRTPTESSYQGSQSVVDRWEAIEQKQNLPSAYEQLGGRRNSISSELPAVTQLQKIAPVTANKVVVAFQTTSFGKILVLAFADGTVEYRDRLTFEELYTTQELNKVQNLRQIGWTFADEGPCQQVAFSPTFCSMVQMGEDGKIKWNKLHYPMGDIGNSMQDAQYCGSIAALTVTAAPSMFYQNNYDDLLAIVRPYTTKKRFVQDLVTELIRILKIQIDYSEEIHHDSLVRNGSLQYCLSIMNALGFRGDFHPRSFQGKFSMLFLNVRNVVVLITIASNTPVTVREKLSPLDDPEVIETLVGCARWALDLIAWLMDCLFELMNDNHFQELLTRERFHELAPYLHEKNNVAFHFLMSSSSRGFLSAICRRLAHLEALSGRAIEFYRKQSAVVEGMAGGRAAPQLQQAYQAMQQVTSSALVKVSEVETLLTGLSNEIRQAYQIFLPSLAKSQNNQTQGKQLDMAMKAARVQMELSILLSAAPPAPFLQIIKKFFNTDLPAFRNTVDPGRLFFANYDLLEVEDDEHSLAAKKARGMVYVDVFKRMQIRPSPDKQWRRCSRCTAVMEDVFGSRSGFTFVLGQQRKCSCGGQWTLLPKGHVS |
Length | 946 |
Position | Tail |
Organism | Gibberella intermedia (Bulb rot disease fungus) (Fusarium proliferatum) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Hypocreales> Nectriaceae> Fusarium>
Fusarium fujikuroi species complex.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.207 |
Instability index | 46.03 |
Isoelectric point | 6.45 |
Molecular weight | 105278.88 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP21588
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 236.92| 99| 230| 26| 146| 1
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35- 99 (82.28/73.23) ...............................................................................................................................KQLQQRMDDiriRGCCQTVAWSRT.GSIANITPDGQnLELRFLRRSPDDGSWDLSEPTTCPFVKGL
107- 146 (28.49/15.89) LVWAGTSSPDLAVIDAVGRVSIVSfSISLNHPFPQRkWDA.........................................................................................................................................................
335- 372 (36.96/ 8.68) VDSTGKNTTPPMVVTARSRTPTES.SYQGSQSVVDR.WEA.........................................................................................................................................................
460- 521 (89.20/42.95) ........................................ieqkqnlpsayeqlggrrnsisselpavtqlqkiapvtankvvvafqttsfgkilvlafadgtveyrdrltfeelyttqelnkvqnlRQIGWTFAD...EGPCQQVAFSPTfCSMVQMGEDGK.IKWNKLHYPMGDIGNSMQDAQYCGSIAAL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 55.51| 17| 30| 740| 757| 5
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740- 757 (26.62/21.47) VEGMAGGrAAPQLQQAYQ
773- 789 (28.89/17.98) VETLLTG.LSNEIRQAYQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 49.00| 19| 288| 258| 276| 8
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258- 276 (32.10/23.42) LLAVA...TTSKQL......KLIRI.EIQ
538- 566 (16.90/ 9.04) LLAIVrpyTTKKRFvqdlvtELIRIlKIQ
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