<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21584
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDSRAAAAEAMRSAIEYWSQFVARSISQRLDTEKFENYVRLVHDQHPLPPALVADFFLRPQPSNDNSLDPRIPPYLQVLTRLGYVDAPSILKALYKYSSLHAYAQQPNAHEGRENEKENGKSDDKEKDENQQKITRWKSSYWAEEVLFYGITKSVVEGKAIRDSKTALDMTRIISKLMVLFTTAFAADMIEQLHTAQVRDEMESSRAALVALLLRMCENDILVGAVSKPIAKDVRKEMSAGLASFVPTLQLVPQITDKLEQFRTEILACSDPADKKKQATNAAMDELLDSAVGLDNFVVADIPVSNTRAGLYIYLNAALIARPLLDDHALFSYMSNKYQGDIQSSAIDLILASFDILANAVFRNEGQKDAHLLRSFLINKIPILLYQLLPPGFPGTSAEFCITEALSHVDTSLFPTASLMFDESRNNNPYTESIREEFCAACVLHGLVQREHVERILGEISLSYEPSLQKHSKDKLVQDCLSDTEKIQGLVRELDKMDGNVGAVCQALVEVLRQSCHNKETMSLKVLCSQLAAKPQSLDVILLFEKLPNILEPLCQLLDNWRYEDDQEEYQPVYEEFGAVLLLVLAFTYRYNLNAVDIGIASPDSWVAKIIGRGHIGRQCNELTQRENDHLNGWIHGLFDTEAGGLGDELMSSCPPQEFYLVVAPLFQSIVVAYTHGYLNDESLKGGIEYLVDTFLLPSLVPAIRFLADYLWIDQKEQKSIIKILQLILLPSSISGEASTMLSSVKNLIAKPLEHALRTYQRRDPQNQDIEPLLRTLRDSIPLSRRTGGTDLNELESWTVTPPTGLSSAIKLTTQGLVHWSMHPAMNSMPTSYTHRQILAALKIMGPKRVLHVILEEIRQHTETGSASIVYDVAISLICAPDAAKDAPAVVDANGNMLPPVQRQRSLRDLLKVEAEGCRKLQKKDPALAEIVVRLHRRVEAQMIIPQPPGMLQTAEMSLNLDGDTAALGDAMAAAASGVQDNMSVDNLTLDVSMGGVPSDLGLGSANDGGSLDPSGDAAMFEGFDTQDMDNFDWDDIGNAF |
Length | 1041 |
Position | Tail |
Organism | Gibberella intermedia (Bulb rot disease fungus) (Fusarium proliferatum) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Hypocreales> Nectriaceae> Fusarium>
Fusarium fujikuroi species complex.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.159 |
Instability index | 44.76 |
Isoelectric point | 4.99 |
Molecular weight | 115512.46 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP21584
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 214.74| 70| 158| 453| 525| 1
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453- 525 (109.38/91.62) VERILGEISLSYE.PSLQKHSKDKLVQ..DCLSDTEkIQGLVREL......DKMDGNVGAVCQALVEVLRQSCHNKEtmSLK
607- 685 (105.36/76.51) VAKIIGRGHIGRQcNELTQRENDHLNGwiHGLFDTE.AGGLGDELmsscppQEFYLVVAPLFQSIVVAYTHGYLNDE..SLK
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 42.10| 13| 20| 751| 763| 2
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751- 763 (24.12/13.64) KPLEHALR...TYQRR
771- 786 (17.97/ 8.49) EPLLRTLRdsiPLSRR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 116.76| 37| 147| 539| 582| 3
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383- 440 (52.22/24.68) ILLYQLLPPGfpgtsaefcitealshvdtsLFPTASLMfDESRNNNPYTE..SIREEFCA
541- 579 (64.54/43.40) ILLFEKLPNI....................LEPLCQLL.DNWRYEDDQEEyqPVYEEFGA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 59.78| 18| 19| 960| 977| 6
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960- 977 (28.73/22.23) NLDGDTAALGDAMAAAAS
982- 999 (31.05/24.75) NMSVDNLTLDVSMGGVPS
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