<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21567
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDGASYNMDVDDLFGDSEHVNIQTINTTPPVKGLDGRIDELGSSGCCQKISWSKNGCVAYISPDGYSVSLKIFSRDPETGKWDLGRNVPLDLPQGRDVFPLTHLSWSHLGNDLAVMDEAGRVMVFSCAMALDRMHFTRAEVAHPESEVDAVVARYVLTWSQNLIAWSAAREGNKWRWNIRQHLFNNAHHPVDGKASLIYLKRHGEVKLRFQQNDNNWQETSAQLEPMISTKESFTHAAFASNNDNTLLLAAYDVKRRLHLYRIETVWNVPTDKRSQNAGPFEKPTIQVSLIALEDACNPIELANDDLSNGAASRGAAAAQLTHLNFLPITPQQDNGSIPTIQAIFTKPPNPISYDMNHQEARYSIIVKWEVHQEQQNQLHPSLDQVTSKKKSVSSVPAQNSFLLKRQPDFSLHAVVLAFHPIWYNMLLAFCYSDGAIEFRKRSTMEMILPDGNTETVTSLLQAGFVFQHAEPSLHVAFSPNHCMAVGMQLDGTIKLRSMEYSHGALSTDDEDPRHSAALAALILQSSSAANQYFSSDDIFAIIGTLSDKRKYDFVNLLFEGLQVNIDCGIDDTSTNHFLLLGRSPFFVKTLSAMHLLGLQGNVDRTLSSKMAWQILNIKYVTQILTTIVRMHGDVSKTNLRPEGVPQMIGTCRWTMHFMAYILDELFTLGRVLSDIPSADLTRSVLETKIRELNKPAVLIVLSAFPRAMMRLWAQPIQWVKRSAEAQAANPNAPTQSPESKKLYTPLLSAVTELPFEWRWFEVLISETQNHVRGIYKQRNLTDAQRNNVERELLLGKIPDILFPAAKRLVTDTLWNSNQQNGCLADKLDMGKLMFFDTTWLGFQDSKRARIWHDAHVVDVCQKMIIRGVGTWVHPVNTGPPGQQGGSSSRNRSDSIQSAGGGMNGEGGHGERKRRNMLRQCVRCGACMEDVVPGLQGYTPHHYQWLMGVSKHCVCGNSWMLVENKGKAR |
Length | 969 |
Position | Tail |
Organism | Stemphylium lycopersici |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Pleosporomycetidae> Pleosporales> Pleosporineae> Pleosporaceae>
Stemphylium.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.309 |
Instability index | 42.48 |
Isoelectric point | 6.93 |
Molecular weight | 108642.42 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP21567
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 121.25| 34| 101| 252| 285| 1
---------------------------------------------------------------------------
252- 285 (60.93/43.28) YDVKRRLHLYRIETVWNVPTDKRSQNAGPFEKPT
354- 387 (60.32/42.77) YDMNHQEARYSIIVKWEVHQEQQNQLHPSLDQVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 472.35| 121| 709| 84| 209| 4
---------------------------------------------------------------------------
84- 209 (194.44/127.57) LGRnVP.LDLPQGRDVfpLTHLSW.SHLGND.LAVMDEAGRVMVFSCAMALDRMH.FTRAEVAHPESEVD...AVVARYVLTWSQNLIAWSAARE.GNKWRWNiRQHLFNNAHHPVDGKASlIYLKRHGEVKLR
699- 780 (100.30/52.78) ................................LIVLSAFPRAMMRLWAQPIQWVKrSAEAQAANPNAPTQ...SPESKKLYT...PLL..SAVTElPFEWRW..FEVLISETQNHVRG....IYKQRN......
795- 915 (177.60/100.35) LGK.IPdILFPAAKRL..VTDTLWnSNQQNGcLADKLDMGKLMFFDTTW.LGFQD.SKRARIWHDAHVVDvcqKMIIRGVGTWVHPVNTGPPGQQ.GGSSSRN.RSDSIQSAGGGMNGEGG......HGERKRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 168.06| 52| 54| 434| 486| 5
---------------------------------------------------------------------------
434- 486 (86.49/55.01) DGAIEFRKRSTMEMILPDGNTETVTSLLQAGFVFQHAEPSlHVAFSPNHCMAV
491- 542 (81.56/47.96) DGTIKLRSMEYSHGALSTDDEDPRHSAALAALILQSSSAA.NQYFSSDDIFAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 136.35| 45| 564| 2| 52| 6
---------------------------------------------------------------------------
2- 52 (67.48/56.13) DGASYNMD..VDD.......LFGDSEHVnIQTINTTpPVKGLDGRIDELGSSgccqKISW
560- 613 (68.88/38.00) EGLQVNIDcgIDDtstnhflLLGRSPFF.VKTLSAM.HLLGLQGNVDRTLSS....KMAW
---------------------------------------------------------------------------
|