<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21565

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSDHSAKRQRLDSIGRFSPASPPFDVAAKASGQTAKTPIHPRTPTSPPYSSMNSQSNGGFSTTSTATSSDRSPQSSVPMSQSLEQSATLASIQHPFPTPASTAGFLSSANVDSDGDATMEESADDDAAPERSHRLSNHNRQRESAYTQDGRLRAAQGISGSQLFKLNTEKIETSRPHASQNFITLYRLEPLASSVARNDPVTGEKINKLRKSYEGHIKQMQIAGKPKATKMDGVFRDLLMLPEEIWQPNHVQNREPHKTALTPDGTALTPDFSQLLDGAFAGMGPGSLPNADANKYKAYLGTDDTAKPKAQEAPPQRPTSFTSSTGTPNSQFNTRGVPRPERSGSKRAYTDAAFQGYGEGFGDDYADSTGGEDTPGGNMANKRRKLQFERTSHSVEVGGARR
Length402
PositionHead
OrganismStemphylium lycopersici
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Pleosporineae> Pleosporaceae> Stemphylium.
Aromaticity0.06
Grand average of hydropathy-0.896
Instability index55.09
Isoelectric point8.87
Molecular weight43304.00
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364151

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21565
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.49|      19|      23|      19|      37|       1
---------------------------------------------------------------------------
   19-   37 (33.39/16.14)	PASPPF.DVAAKASGQTAKT
   44-   63 (32.11/15.28)	PTSPPYsSMNSQSNGGFSTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.72|      17|      21|     154|     174|       2
---------------------------------------------------------------------------
  154-  174 (18.01/19.50)	AAQGISGsqLFKLntEKIETS
  178-  194 (28.71/15.18)	ASQNFIT..LYRL..EPLASS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.63|      16|      20|     302|     318|       3
---------------------------------------------------------------------------
  302-  318 (26.11/14.00)	TDDTAKPKAQ...EAPPqRP
  322-  340 (25.52/ 9.79)	TSSTGTPNSQfntRGVP.RP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.90|      49|     110|     101|     150|       4
---------------------------------------------------------------------------
  101-  150 (80.03/52.12)	STAGFLSSANVDSDGDATMEESADDD..AAPERSHRlSNHNRQRE...SAYTQDG
  212-  265 (79.87/47.96)	SYEGHIKQMQIAGKPKATKMDGVFRDllMLPEEIWQ.PNHVQNREphkTALTPDG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21565 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ADANKYKAYLGTDDTAKPKAQEAPPQRPTSFTSSTGTPNSQFNTRGVPRPERSGSKRAYTDAAF
2) GYGEGFGDDYADSTGGEDTPGGNMANKRRKLQFERTSHSVEVGGARR
3) MSDHSAKRQRLDSIGRFSPASPPFDVAAKASGQTAKTPIHPRTPTSPPYSSMNSQSNGGFSTTSTATSSDRSPQSSVPMSQSLEQSATLASIQHPFPTPASTAGFLSSANVDSDGDATMEESADDDAAPERSHRLSNHNRQRESAYTQDGRLRA
291
356
1
354
402
154










Molecular Recognition Features






MoRF SequenceStartStop




1) FDVAAKASGQTAKTPIH
2) FITLYRL
3) MANKRRKLQFERTSHSVEVGGA
4) MSDHSAKRQRLDSIGRFSP
5) NKYKAYLGT
24
182
379
1
294
40
188
400
19
302