<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21522

Description Transcription elongation factor A1
SequenceMEDEVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDPEEKKKDTAVTSQNSPEAREESSSSGNISSRKEEANARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKKICA
Length303
PositionUnknown
OrganismFelis catus (Cat) (Felis silvestris catus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Carnivora> Feliformia> Felidae> Felinae> Felis.
Aromaticity0.04
Grand average of hydropathy-0.795
Instability index47.77
Isoelectric point8.76
Molecular weight34003.36
Publications
PubMed=17975172

Function

Annotated function 
GO - Cellular Component
nucleolus	GO:0005730	IEA:Ensembl
transcription factor TFIID complex	GO:0005669	IEA:Ensembl

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21522
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.90|      26|      29|     101|     127|       1
---------------------------------------------------------------------------
   79-   95 (18.37/ 6.02)	..........GPSTDKDPEEKK.K..DTAV
  101-  127 (39.11/24.64)	PEArEESSSSGNISSRKEEANA.R..DTYV
  131-  159 (34.42/17.20)	PRA.PSTSDSVRLKCREMLAAAlRtgDDYV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.31|      24|      29|     245|     271|       4
---------------------------------------------------------------------------
  245-  271 (39.41/34.28)	IrehQMAKTGGTQTDLFTCGKCK...KKNC
  276-  302 (37.90/24.02)	V...QTRSADEPMTTFVVCNECGnrwKKIC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21522 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LLDGPSTDKDPEEKKKDTAVTSQNSPEAREESSSSGNISSRKEEANARDTYVSSFPR
76
132










Molecular Recognition Features






MoRF SequenceStartStop




1) SLIKSWKKLL
68
77