<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21464

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMSDSFSLPLRPLIEKRDRPDTLPVDIAQINARWGSFRDVNEDTLRAKIEEEKNRGPYSDDDEGDKAAEDMDTTEQLEQLYKRRAEILNFAMQAHMETLFALDFVSLLLTKHTDRQAETSMSAFLKQVAPLGSLNSEIVNPPPKSEAVAQDVKTVSRGWRMQNFNAAANKLLKSATRLETEVASESKYWDEVLAVKEKGWKVCRLPRERQALGVQYGFMEATPIFRDRGLAALRRADDGSLILDKGLAPQKTRTVRVRVKHHDKFTGCSKVPGSSPAVDSIESRILQARDTVYEEELFHELVREARIMGSQGVTTRQNLVRFPISEEQEVLLDLVDADQDTDDSKMESTEHDVLADALSHSIRILLAYAHRQNLRRRTQPPPPLSQKRRHTPEYQLLRPIMAYLQHSSHVRSLETFMTDIYQVLQVAGLKCEFQAAPFSSVHLSRVHPSIPKVEGLVQQFLMPFESTFSGNLATPQSSFKVRIRTNPAAPPFGTLYDISVNLPQYPDVQPPSRIGSQREAAAALTHFAMLDIVSAIATHGTKLSKERPRKDTLAWESPFPHHGELLALSDDDRGHKLIVSLSQNELMVETFPRSGPEGLRWSPGDPSPAVHSQTWKLDQTGSASLIDFITEVSREW
Length635
PositionHead
OrganismAspergillus ellipticus CBS 707.79
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
Aromaticity0.07
Grand average of hydropathy-0.502
Instability index51.41
Isoelectric point6.13
Molecular weight71594.15
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21464
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.14|      15|      24|     424|     439|       1
---------------------------------------------------------------------------
  424-  439 (23.46/19.52)	QVAGLKCEFqAAPFSS
  451-  465 (27.67/17.73)	KVEGLVQQF.LMPFES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.68|      28|     127|     378|     405|       2
---------------------------------------------------------------------------
  378-  405 (52.04/30.27)	QPPPPLSQKRRHT...PEYQLLRPIMAYLQH
  508-  538 (38.64/20.73)	QPPSRIGSQREAAaalTHFAMLDIVSAIATH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     279.79|      94|     104|     124|     226|       3
---------------------------------------------------------------------------
  124-  226 (138.85/111.85)	LKQvAPLGSLNSEIVNPPPKSEAVAQDVKtvsrgwRMQNFnAAANKLLKSA...TRLETEV..ASESKYWDEVL..AVKEKGWKVCRLPRERQALgVQYGFMEATPIFRD
  232-  332 (140.94/87.74)	LRR.ADDGSLILDKGLAPQKTRTVRVRVK......HHDKF.TGCSKVPGSSpavDSIESRIlqARDTVYEEELFheLVREARIMGSQGVTTRQNL.VRFPISEEQEVLLD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21464 with Med17 domain of Kingdom Fungi
Unable to open file!