Description | Mediator of RNA polymerase II transcription subunit 19 |
Sequence | MRARHVPSPGLLPSSNISPSVSPPVADQGFPIPALSRTPTHPAGFRLNPQTTPFTLSLVFSSLSGAARYFTSVLCRLIGISSIQVSLSRGSGCPGLGQPPLPSPCTPSSMSDRASSASFRAGPPSPSSPAAGTLKQNQLPAPLSDRIPQTPTSPPLMSVSAQNYATNFVSSQASPNQATSQSATLSSPPSSAPMSTQASQQPTVGTANSFPTPASSVSGHFPGATSFDDPENTDKPMGSTVPDTGAQTANMNAAAIQQAEHRRTDHDRHTEGIKMEVGVRDFAVNHGGDAMDIDSEAPASSSRSEPSLESLQKNFSSAFHVCKSSHIATGPDPSLDLISLYGLGPVAKSVARMDPVTGEKINRLRKSYEGKLKGLGLAGRNKPVKTEPGAPGSLRHMTMWPEEEWQNQKVFGKEIKVADMDSALHSLQMRAMKMEPGTVPNNEYWEDVLGHEKPSKHAGGDASKKGVAPPPNGVRIPQPNGTPAPVSDQERSRPSRGRKRHYDDNSFVGYGEGYADDDDDGAFYSNSEGMGKKKRKKVGRSDGEMAF |
Length | 547 |
Position | Head |
Organism | Aspergillus lacticoffeatus (strain CBS 101883) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus> Aspergillus subgen. Circumdati. |
Aromaticity | 0.05 |
Grand average of hydropathy | -0.630 |
Instability index | 57.76 |
Isoelectric point | 8.70 |
Molecular weight | 57844.78 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364151 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP21437 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 246.97| 49| 50| 104| 152| 1 --------------------------------------------------------------------------- 53- 102 (44.67/12.53) .PFTlslvFSSLSGAAryfTS.....VL.CRL..IGISSIQVSLSRGSGCPGLGQ...PPLP 103- 151 (89.74/32.11) SPCT....PSSMSDRA...SS.....AS.FRAGPPSPSSPAAGTLKQNQLPAPLSDRIPQTP 152- 202 (59.40/18.93) TS......PPLMSVSA...QNyatnfVS.SQASPNQATSQSA.TLSSPPSSAPMSTQASQQP 203- 244 (53.16/16.22) TVGT....ANSFPTPA...SS.....VSgHFPGATSFDDP......EN.TDKPMGSTVPDT. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 95.50| 28| 460| 7| 37| 2 --------------------------------------------------------------------------- 7- 37 (48.27/24.89) PSP.GL.LPSSNISPSvspPVADQGFPIPALSR 469- 498 (47.23/18.45) PPPnGVrIPQPNGTPA...PVSDQERSRPSRGR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 42.93| 11| 14| 503| 513| 3 --------------------------------------------------------------------------- 503- 513 (21.72/16.45) DDNSFVGYGEG 519- 529 (21.21/15.88) DDGAFYSNSEG --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) DDGAFYSNSEGMGKKKRKKVGRS 2) FVGYGEGYAD | 519 507 | 541 516 |
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