<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21429

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMNTQTQTALRTLESTLHTLLTTLTISPTASGAPTAALNLLAADDALTATIETLRVHQANYARILALRAEAQALEEKVKGVVREVVRFEEVIGGVIGDSDSDSDSEFEDDFEDDSEGEGDVDFAMRDEDTYAATEHRRTKKLRGVKEVDYKLLLDFARRISKYNHQAAADAAAGVEERIAAARRASANAAAAAAAAGTDTKDAEMGGMTGAEGGANGDSDQVPVAEVTKGATSWLDESAQLTRQVYMLPYPMEDRIRMGLMGQIQLAAAEGRPGFEVEGEVERLIREAEGLGVADPVAAPAVEVAEQARHADEAARAAALAGSTATSGGARAAAPPPKPKATLDLDLYDPDEDDE
Length354
PositionMiddle
OrganismAspergillus saccharolyticus JOP 1030-1
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
Aromaticity0.04
Grand average of hydropathy-0.364
Instability index33.91
Isoelectric point4.47
Molecular weight37397.82
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364141

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21429
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.64|      14|      18|      97|     110|       2
---------------------------------------------------------------------------
   97-  110 (25.88/15.79)	DSDSDSDSEF....EDDF
  113-  130 (20.76/11.37)	DSEGEGDVDFamrdEDTY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.89|      16|      18|     284|     300|       3
---------------------------------------------------------------------------
  273-  288 (24.49/13.85)	GFEVEGEVER.LIREAE
  289-  305 (20.40/16.20)	GLGVADPVAApAVEVAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.81|      18|      18|     186|     203|       4
---------------------------------------------------------------------------
  186-  203 (27.43/13.57)	ANAAAAAAAAGTDTKD...AE
  205-  225 (26.38/12.74)	GGMTGAEGGANGDSDQvpvAE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21429 with Med4 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAAAAAAGTDTKDAEMGGMTGAEGGANGDSDQVPVAEVTKG
2) DPVAAPAVEVAEQARHADEAARAAALAGSTATSGGARAAAPPPKPKATLDLDLYDPDEDDE
189
294
229
354










Molecular Recognition Features






MoRF SequenceStartStop




1) ARAAALAG
2) GGARAAAPPPKPKATLDLDLYDPDEDDE
3) RIAAARRAS
314
327
177
321
354
185