<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21414

Description Uncharacterized protein
SequenceMGVSSTARLPTLGAQSIPQLFTHLQVSSNAKVVSRWSITIRSFRAVPVPTNAWPSSSYNEDAGASSSSSLNAGSSSNSAAAPSSSSGPPPLTKPRTMWQVWLSDYPGVVFIIVEDAGQASRAKVWKDWEIRKKKWRTEKRLEIKKRKEREAEAASAASDSKANEEQTIPDANGQAGTSTALQAGAATASSDENGLEKSIGQGAYASTNLMDVDAASAPHQLGQSDRDLAGVATATGTGDGSEEPVPVAGPKPELRMPAHTRYSVAAVTSSMSAMLTSLNLPPPHGAPVGTAGPGAWVPRGAAVSIEGLVLEISSQNMGGLGGVMGAASHIDDNGQSNVDWRVRVGSVVGGGGRSAGAVVEAEFLPISGGLLPTSPYVQNFLQSLFPPNLVTIPTVPPVGPGAFGSIPGMMGMPMNGVGQPNMQSQPQQFPHQQQQHQHGSNGIPGMLQPQRVNGASGMQSAALGTSANLTPANYVIGSSAKLPGNTPNSSFNIPVISDQLWEEVVPRSGDQWRQLILSRCQQLKQARLAKSRKEAVKTILAEDEKNGTSSTSAFGWQTFGESSQSNGATGATDRSKTEDEDDLSSGDELEANEGALGGTDASAAGGAMAGTTVTMQQLDDDDDDDDDRPLGASMFASSNANLKTQPNAQPASAPASALPPRDETVQLTFQGLRCDSTDGAEANGGWSGIERGRRIAFHYVQMLRAEGII
Length709
PositionHead
OrganismTesticularia cyperi
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Anthracoideaceae> Testicularia.
Aromaticity0.05
Grand average of hydropathy-0.413
Instability index48.39
Isoelectric point5.16
Molecular weight73772.83
Publications
PubMed=29771364

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21414
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     252.40|      49|      51|     347|     396|       1
---------------------------------------------------------------------------
  236-  284 (27.50/ 7.47)	..GTGD...GS......EEPVPVA.......G.PkpelRMPAhTRYsvaavtssMSAM..LTSLnLPP............PH.
  292-  345 (42.40/15.35)	..GPGAwvpRGAAVSIEGLVLEISsqnmgglG.G....VMGA.ASH........IDDN..GQSN.VDWR........VRVG..
  347-  395 (82.46/38.10)	VVGGGG...RSAGAVVEAEFLPIS.......G.G....LLPT.SPY........VQNF..LQSL.FPPNL.......VTIPTV
  404-  446 (42.03/13.04)	............GSIPGMMGMPMN.......GvG.........QPN........MQSQ..PQQ..FPHQQqqhqhgsNGIPGM
  452-  496 (58.01/21.48)	VNGASG...MQSAA......LGTS.......A.N....LTPA.NYV........IGSSakLPGN.TPNSS.......FNIPVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.22|      44|     110|      35|      78|       2
---------------------------------------------------------------------------
   35-   78 (76.31/42.61)	RWSITIRSFRAVPVPTNAWPSSSYNE....DA.G.ASSSSSLNAGSSSNS
  140-  189 (52.91/27.22)	RLEIKKRKEREAEAASAASDSKANEEqtipDAnGqAGTSTALQAGAATAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.34|      36|      37|     547|     582|       3
---------------------------------------------------------------------------
  547-  582 (62.66/32.14)	GTSSTSAFGWQTFGESSQSNGA.TGATDRSKTEDEDD
  586-  622 (55.67/27.71)	GDELEANEGALGGTDASAAGGAmAGTTVTMQQLDDDD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21414 with Med20 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MMGMPMNGVGQPNMQSQPQQFPHQQQQHQHGSNGIPGMLQPQRVNGASGMQSAAL
2) NGTSSTSAFGWQTFGESSQSNGATGATDRSKTEDEDDLSSGDELEANEGALGGTDASAAGGAMAGTTVTMQQLDDDDDDDDDRPLGASMFASSNANLKTQPNAQPASAPASALPPRDETVQLTFQGLRCDSTDGAEANGGWS
3) PSSSYNEDAGASSSSSLNAGSSSNSAAAPSSSSGPPPLTKPRTM
4) STNLMDVDAASAPHQLGQSDRDLAGVATATGTGDGSEEPVPVAGPKPELRMPAHTRY
5) TEKRLEIKKRKEREAEAASAASDSKANEEQTIPDANGQAGTSTALQAGAATASSDENGLEKSIGQGA
409
546
54
206
137
463
687
97
262
203










Molecular Recognition Features






MoRF SequenceStartStop




1) TMWQVWLSDYPGVVF
2) WSITIRSF
96
36
110
43