<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21405

Description Uncharacterized protein
SequenceMSVLSYTPMRSSTSTFWTPVCSNHWLLDRPQLDLARKEDLQYAASLECGAIGIFFSNLISLLCKRLNLRQRVTATACVFFRRFFAKNSYSASDPFLVAATCVYVSAKVEESPVHIKSVVAEATRTSQEVGCRTFPPDNSSVAEMEFYLLEEMEFDLVVHHPYRSLIALYDSVGCPRNHVHDGSGFQLGGAGNSGVDTGSQAIGDPISLGVGLSVSQAEEIAQFGISGLHSSEERDSGLQHGQIRLHELDEHILQMTWFVLNDTYKTDLPLMHPPYMLALASLWLALVLHTSSHDKIGASVRDMRSRREQHDMQIEQILNGSSSASSSDRSMGPSSMPRPPEPPSEDALTFFAHLNVSIQLLAEIVQDLLSSYQLQNVANALVKDGPRVVKLLDHMRDRRRQDLLQMSTQRLVIHCDENETVNEDTTMGDCGPHRQGARQRTCQFHIAGNWDMSGVFDAFWELADDFDGIEPWQAFFCERVRKEDSRVSTSNRVTLRQSARWSVNDVWHVEPTDSLPLGDPTIFRAQHGDHPVKVGVWTPFGVKAVGCLYELTAQTSSQLFLAGRHGRAAPYQTSLAAWLKVLLRRGVAAEYATEAGCADEATMRDGMRGVHVTHVFTINLDRLCRVSLSNWNVTQTLRSRQTPIRKMDGWDNPSSTSASGWDQKSQPQQPQQHQQYTSNSTYANNRNQYASQQAQEYQGYPPNNGWSQSPRRGGRGGRRGGGGGYYGGAGGGGGGGADYHHQQSKEQREENRLRHLRSQLFKLGGEKDFHPPSDLLKMSRWIEDKARDGVDPITASFRVMVTEQPHKIPLIAALIGFLCLSSQAEAARGTVSKAPQAERPEGNDDMDQGGEKSASTEKQQHQQQEQDSLGIAIVKDLVKAFRSYLDARLWRNTRLTLHLFAALVPLQIIPAASLRALLSSFGAVLDEPGVSAVRGDRASLCIIETLCRAGQDLLMDSEQAQADLDGLVDKVVNYNSSRKVELELARPVHDTEGIWLDGFENAVQALEALRVSGYRRPAFLAIPEDLLPAAISPSVTSVPKDLRVVTLPDVLVPPDDDVEGEGLDVAYAQLGVHQVKKRRIDTGKGELEEKKAAVGPERVGQQPRWFANTTPKVGTPSSVVLRAVLADMMDLYEVNRKDASRLLLDLPKWMRRGTFAGKASSEAGLFGEIDEEWWFVGPEASVEGAWSLDDLLVETILSTALVLPSSPRNPLYYTSLLREIVCLTPGTVAPSLGRTIRAWYNAMATGKVDVEAINRFADWFAIHLSNFNFGWAWKEWIPDTALPAEHPKRAFMRRVVELEIRLAYYDRIKQTLPDEIQAASLPTEEPTPTFTYADEAHAYHGQAARLINSIRAKASAEVLLAEFESFKATIFDASGTALPSSGGEGSVASALEADLVVRDLTIQCILQVGSRSFSHFLNIVERYHSLLRQLSRSSRMRLAILAGSVRFWARSAQWIQIVLDKLLQYRIVEPADVVEFVFAPPTDEPGSILVGSGAQIQGGHAEPTRDWSTFNWWCILRLTLDKVNGRVDQLKKRLVEIQRSEAEEQERKEAAAVAGLQDGEDPSNPRSGEDLQMPGSNLPLFPTSALLPPKQLTEEEKRQQTQISSQEALNSLDSIKAEQRKVLITSIMGFKSLLDSQPASSEEKDQVPSTSQSWQRWWVNSYATEFARSYNRQLLENRHLVLSNCFSSLHSLRETIERAIDMLSE
Length1705
PositionKinase
OrganismTesticularia cyperi
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Anthracoideaceae> Testicularia.
Aromaticity0.08
Grand average of hydropathy-0.357
Instability index51.58
Isoelectric point5.77
Molecular weight189610.48
Publications
PubMed=29771364

Function

Annotated function 
GO - Cellular Component
nuclear cap binding complex	GO:0005846	IEA:InterPro

GO - Biological Function
RNA cap binding	GO:0000339	IEA:InterPro

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA transport	GO:0051028	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21405
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     449.07|     144|     209|    1078|    1239|       1
---------------------------------------------------------------------------
 1094- 1239 (242.81/195.93)	VGPERVGQQPRWFA.............NTTPKVGTPSSVVLRAVLADMMDLyEVNRKDASRLLLDLPKWMRRGTF.......................................AGKASSEAGLFGEIDEEWWFVGPEASVEGAWSLD....DLLVETILSTALVLPSSPRNPL.YYTSLLREIVCLTPGTVAPsLGRTIRAW
 1248- 1448 (206.25/132.51)	VDVEAINRFADWFAihlsnfnfgwawkEWIPDTALPAEHPKRAFMRRVVEL.EIRLAYYDRIKQTLPDEIQAASLpteeptptftyadeahayhgqaarlinsirakasaevllAEFESFKATIFDASGTALPSSGGEGSVASALEADlvvrDLTIQCILQVGSRSFSHFLNIVeRYHSLLRQLSRSSRMRLAI.LAGSVRFW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     234.34|      69|     210|     781|     862|       3
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  294-  346 (77.06/34.65)	DKIGASVRDMRSrREQHDMQIEQILNGSSSASS.SDRSMGP..SSMPRPPEPPSE..D..................
  635-  674 (43.54/16.93)	.................................QTLRSRQTpIRKMDGWDNPSSTsaSGWDQ...KSQPQQPQQHQ
  791-  862 (113.74/82.75)	DPITASFRVMVT.EQPHKIPLIAALIGFLCLSSQAEAARGT.VSKAPQAERPEGN..DDMDQggeKSASTEKQQHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     370.08|     119|     556|     903|    1028|      10
---------------------------------------------------------------------------
  903- 1028 (179.33/134.12)	LVPLQIIPAASLRALLssFGAVLDEPGV......SAVRGDRASLCIIETLCRAGQDLLMDSEQAQADLDGLVDKVVNYNSSRKVELElARPVHDTEGIWlDGFE.NAVQALEALRVSGYRRPAFlaiPED.LLP
 1462- 1588 (190.76/121.60)	LLQYRIVEPADVVEFV..FAPPTDEPGSilvgsgAQIQGGHAEPTRDWSTFNWWCILRLTLDKVNGRVDQLKKRLVEIQRSEAEEQE.RKEAAAVAGLQ.DGEDpSNPRSGEDLQMPGSNLPLF...PTSaLLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.74|      27|     513|     229|     255|      12
---------------------------------------------------------------------------
  229-  255 (48.92/33.53)	HSSEERDSG.LQHGQIRLHEL....DEH....ILQM
  743-  778 (31.82/18.97)	QSKEQREENrLRHLRSQLFKLggekDFHppsdLLKM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21405 with CycC domain of Kingdom Fungi
Unable to open file!