<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21403

Description Uncharacterized protein
SequenceMPPRNAGAPASVTGNSHMRSRKTSSPSDVVLPPLHTALGASAALSPNSSSRAASTLNPSSYNTSSSSAHSRSNVNRDVNLSTSSLHVDSASSVYARPSSVQRSKDHQRQHANSSQITIAIANGPNARPSAGMNNAIDDPTAAATAASGTEETSPGAAAANGNSAKKKSTKKAVSCEPCRRRKLKCDRGWPCGACRDRGESSKCEWAEGVRPQSTGRDGNEGAQVNERLDRLEAMMGAIASSLGVELPGKKEEAGAARKRSSASAASVPPGSAPGTISKLSTLAELGAVEANKAAALAARAGSRQYSEGYPLATPNSWGFGFGFSQMSQISSEELTRKTLFELISLLPDTETVRNLTGFYFRELSWLAHLIPEEAFRRKLRSHEEMRLLWDGRPNSYRYEDLRDHLRLVAILHALCGAALVFGEPIEGDLLQEKYGKNVYAIFLDASQHALSVLDIYEDLHIDNVRAMMMLSTCLNALKGPTVGSAMMANIYFMAYALQLDVEPPEHLPYEERKDRVNLFATLCISDWFSAGNVKRSYTIDPANTSIPSLFGPDAEKNDMLACPMRFKIKLSDIARRASHRMRMNEEEAYALTKQLHQEVVAIETAIPEHMRFDESLIEADGEDNPERWHRSAMALAVQMQLLTLHKRFYVQSWTDSKYKESRDISFAASMLIIKIFRNSFKWFNPRENSTIDEQRAMIGEGMRKQRNSVSRLWFFAQMSIISSLVLIHFVSMLDTHPQETCDWDSSELRAQITDDLKFVRLLLQALSSKSKLALDGARAIQPPETSRKRKAEETLIGPQARSSSNRGGGPLHSRSMESLPVRNTSWYSASSSYSNGGAPAYSSPGSSSNSSHSLAHSTSASDLATRPRLPFEGQVAPSSAKSFEDIEALWGKQPWQTASLRMGTSPSNINATGAGSGNSTSPMNAFTNSSSGGPSTNTSLTSATSNTSPGFFLTASAAAAHQQQQQQQQQQQQQQQQQQQQQQGGLPDHVYNPECPTICASFFGPDASFKDLTAAEAAIGRQDASFGYPVAPLSPFTAAFINSLDQYVTSLDEPMPSNTPNTNNMPFLGPTGNTLAVPSSHATVGIIQPQAQTVGQGSR
Length1099
PositionTail
OrganismTesticularia cyperi
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Anthracoideaceae> Testicularia.
Aromaticity0.07
Grand average of hydropathy-0.477
Instability index53.43
Isoelectric point8.11
Molecular weight119206.86
Publications
PubMed=29771364

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
DNA-binding transcription factor activity, RNA polymerase II-specific	GO:0000981	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21403
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.24|      13|      15|     175|     189|       1
---------------------------------------------------------------------------
  175-  189 (25.51/28.84)	CEPCRRR..KLKCDrgW
  191-  205 (24.73/18.20)	CGACRDRgeSSKCE..W
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.77|      12|      15|     904|     915|       2
---------------------------------------------------------------------------
  904-  915 (22.29/14.51)	TSPSN..INATGAG
  920-  933 (18.48/10.47)	TSPMNafTNSSSGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.61|      24|     229|      21|      45|       3
---------------------------------------------------------------------------
   21-   44 (42.70/21.63)	RKTSSPSDVVLPP...........LHTALGA.....SAAL
  257-  296 (25.91/ 6.92)	RKRSSASAASVPPgsapgtisklsTLAELGAveankAAAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.85|      20|      21|     363|     382|       7
---------------------------------------------------------------------------
  323-  339 (18.71/ 8.87)	.......FSQMSQISSE....ELTRKTL
  356-  379 (28.49/17.75)	TGFyfreLSWLAHLIPE....EAFRRKL
  380-  405 (19.65/ 9.72)	RSHeemrLLWDGR..PNsyryEDLRDHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.46|      44|     794|       5|     114|       9
---------------------------------------------------------------------------
    5-  114 (42.77/58.64)	NAGAPA.SvtgnshmrsrktsspsdvvlpplhtalgasaalSPNSSSRAastlnpssyntssssahsrsnvnrdvnlSTSSLHVDSASSVYARPssvqrSKDHQRQHANSS
  835-  879 (77.69/38.39)	NGGAPAyS.................................SPGSSSNS............................SHSLAHSTSASDLATRP.....RLPFEGQVAPSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     198.10|      62|     451|     537|     607|      10
---------------------------------------------------------------------------
  537-  607 (98.73/78.17)	YtiDPANTSI.PSLFGPDAEKNDMLACPmrfkiklSDIARR.ASHRMRMNEEEAY..ALTKQLHQEVVAIETAIP
  991- 1056 (99.37/59.83)	Y..NPECPTIcASFFGPDASFKDLTAAE.......AAIGRQdASFGYPVAPLSPFtaAFINSLDQYVTSLDEPMP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21403 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FFLTASAAAAHQQQQQQQQQQQQQQQQQQQQQQGGLPDHVY
2) GAPAYSSPGSSSNSSHSLAHSTSASDLATRPRLPFEGQVAPSSAKSFEDIEALWGKQPWQTASLRMGTSPSNINATGAGSGNSTSPMNAFTNSSSGGPSTNTSLTSATSN
3) LDGARAIQPPETSRKRKAEETLIGPQARSSSNRGGGPLHSRSME
4) MPPRNAGAPASVTGNSHMRSRKTSSPSDVVLPPLHTALGASAALSPNSSSRAASTLNPSSYNTSSSSAHSRSNVNRDVNLSTSSLHVDSASSVYARPSSVQRSKDHQRQHANSSQITIAIANGPNARPSAGMNNAIDDPTAAATAASGTEETSPGAAAANGNSAKKKSTKKAV
5) SLGVELPGKKEEAGAARKRSSASAASVPPGS
951
837
774
1
241
991
946
817
173
271










Molecular Recognition Features






MoRF SequenceStartStop




1) RRRKLK
179
184