<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21400

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMPSKKYKRKPRSKPWSNRNRWSMYPALHEDVTRLLAYDDLDLDFHPFDDSDTNTEEYDTCIMGQFTCPNDSCSSTGWTSKKIAITIRLYPGEEYNARVYHQRCKSCDALSRPVLDDSYAERVAYRIKKWHGVKMEKPPYSRGEHTGPHNMDCTMTDSFSLPLRPLTEKRDRPDTLPLEIAQINARWGSFRDVNEETLRAKIEEDKNRDPWSDEDEDSKPAEDVDTTERREQLYKRRAEILQFAMQAHMEALFALDFVSLLLSKHTPRQAETSMSTYLKQVAPLGSLNAEVVNPPPKSEAAMQDVKTVSRGWRVQNFNAAANKLLNSATRLEGEIASETKYWDEVLAVKEKGWKVCRLPRERQALGFHMATPIFRDRGLAALRRGDNGSLRLDKGLAPQKTRTVRVRVKNRGKLTGCSKLPESPDMGSVEKTILQARDTVYEEELFHELMREARIMGSQGVTTRQNLVRLPISEEQEVLLDLVDADAPADGEMESTEHDVLADALSHSIRILLAYAHRQNLRRRTQPPPALSNKRRQTPEYQLLRPVMAYLQHSAHVRWLESFLNDIYRVLRAAGFQCEFHAVPFSSVSLPRMHPAIPKVEGLVQQFLMPFESTFSGHLVTPQSSFRVKIRTNPAAPPFGTQYDISVDLLHHPDVQPPSRVGLQSDAAAALTHVFKLDIVSAIAVHGSKLVQDSTRKEVEKEPLTWEAAYPHHGELLALSTTGRSKKLKVTLSRQELTVETYSMRGIDGHGQSAGTKPPSHSQTWRCDQTGSQPILMDFVAEASRQQS
Length787
PositionHead
OrganismAspergillus sclerotioniger CBS 115572
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
Aromaticity0.07
Grand average of hydropathy-0.637
Instability index50.20
Isoelectric point8.17
Molecular weight89411.23
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21400
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.72|      19|     193|       9|      31|       1
---------------------------------------------------------------------------
    9-   31 (27.25/23.84)	KPRsKPWSNRNRWSmYPAlhEDV
  205-  223 (36.47/16.68)	KNR.DPWSDEDEDS.KPA..EDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     518.42|     172|     231|     357|     548|       2
---------------------------------------------------------------------------
  357-  548 (259.01/210.60)	LPRerqalgFHMATPifRDRGLA.....ALRRGDNGSLrldkgLAPQKTRTVRVRVKNRGKLTG....CS.KLPESPDMGSVEKTILQARDTVYEEELFH.ELMREARIMGSQGV..TTRQNLVRLPISEE.....QEVLLDLVDADAPADGEMESTEHDVLADalSHSIRILlaYAHRQNLRRRtqpPPALSNKRR..QTPEYQLLRPVMA
  589-  780 (259.41/165.41)	LPR......MHPAIP..KVEGLVqqflmPFESTFSGHL.....VTPQSSFRVKIRTNPAAPPFGtqydISvDLLHHPDVQPPSRVGLQSDAAAALTHVFKlDIVSAIAVHGSKLVqdSTRKEVEKEPLTWEaayphHGELLALSTTGRSKKLKVTLSRQELTVE..TYSMRGI..DGHGQSAGTK...PPSHSQTWRcdQTGSQPILMDFVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      27.77|       8|      40|     304|     313|       8
---------------------------------------------------------------------------
  304-  313 (11.67/11.66)	VKtvSRGWRV
  347-  354 (16.10/ 8.34)	VK..EKGWKV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21400 with Med17 domain of Kingdom Fungi
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