<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21398
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MTSSEQWGTFLRQCLLHRIDATEFKSLTRLLLQRSPITEAPLLNVLLETRLATGIKWDPLLPLYIDCLCKMGVVQTSTVLNSLLKYSSIHDKPPTPGSEMAQSRQKRKCYTLMTDIRVVQDAMLSVSTGSAPKTFLEAIGIFNSIVDWVQAVVAWHNSHMDASHQTGGLMSSPDAVSLFESLGILLAALSGTAKGLQVLSADSHEALKIKLGQALSAYLPLCVEVSLPLRNRLDGLQKEFNLFGEPPSKALDVSMMENVNVNALQFEDSVMDGPMINSRAGLYVYINAMLVGRPLVDDSMLLNFLSNRYGGHYQVLIEEIITAAFDVLSNASYRSESSRSMFLLRSFLVNKLPAFIAAMLAASMVSLPMELCISHALSRLDPNTFPSFSQMFAMQGNTVLSDVRQEFLFACASHKLIPESSIERLLGENPMQTLPVGGPYHKDELVSQINTNPERAEQLINEIESMEGNAGAIVGAITDVMHHLCNQKETMTLKNICNSLSRRTQALDVILLFRSTKQILQPLCALLDAWHWDEDQGESQPVYDEFGSILLLVLTFKFRYDLRPHDMGIGGNNSFVLRLLENGFCSQKLDDLSEKQNKNLGAWINALFMAEGISEETMSTCSPQEFYLLVSTLFNQSLGACEAGKLEFDTLKGGFEYLLEPFLLPSLILALNWLGNHIWETESDPSIPLKTLQSLVNPSSISGEAKEIHRTVLNITARSLEEQLKGIRSRQPEDIKPILDALEPCLSFQRSGSCHRSELEPWTSHTPGGLLASIRSTFQSLLLWSTSPGMSMAPQTYTHRQLLAGIQIQGSARVLTTIIDELKLQTETGNGDVALDVAATIICAPLAESFAVDQNNHSHHPIDPSKEPLSRCPILTLRGALFIQHEHVPKISEKDPLRAEVIVRLYRRVNALMTPPSQVPNLDMNNIIQTMQLGVGGPGQMDLEQSGPGGHDDNINQMLDNAAAAAAAGMDGSQSMGGMGNMGLESTGGGLDTSIDDVLNAADMAVGNPEFLDLDMEGLF |
Length | 1020 |
Position | Tail |
Organism | Aspergillus sclerotioniger CBS 115572 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.030 |
Instability index | 49.45 |
Isoelectric point | 5.04 |
Molecular weight | 111984.15 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 ARBA:ARBA00003669
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP21398
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 92.67| 29| 43| 936| 965| 1
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949- 988 (45.78/28.13) GGHDDNINQMLDNAAAAaaagmdgsqsmGGMGNMGLESTG
989- 1018 (46.89/23.79) GGLDTSIDDVLNAADMA..........vGNPEFLDLDMEG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 152.79| 42| 43| 221| 262| 2
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181- 218 (39.80/22.95) .....SL...GiLLAALSGTAKGLQ..VLSADSHEALKIKLGQALSAY
221- 262 (71.68/47.75) LCVEVSL...P.LRNRLDGLQKEFN..LFGEPPSKALDVSMMENVNVN
264- 303 (41.31/24.13) LQFEDSVmdgP.MINSRAGLYVYINamLVGRP...LVDDSMLLN....
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 59.44| 14| 15| 30| 43| 3
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15- 27 (15.93/ 7.03) .LLHR..IDATEFKSL
30- 43 (24.10/14.41) LLLQR..SPITEAPLL
46- 61 (19.41/10.18) LLETRlaTGIKWDPLL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 63.90| 17| 20| 743| 762| 4
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743- 759 (32.18/21.72) EPCLSFQRSGSCHRSEL
787- 803 (31.72/12.17) SPGMSMAPQTYTHRQLL
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