<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21382
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MTSSEQWGIFLRRCLLHRIDAAEFKSLTRLLLQRCPIAEAPLLDVLLETRLATGIKWDPLLPLYIDCLCKMGLVQTSTVLNCLLKYSSIHDKPQPPGQEAVQIKQRQKCYTLMTDIRVVQDAMLSVSTGTTPKTFSEAICIFNAIVDWIQAVVAWHNGHMDASHQTGGLMGSPDAVSLFESLGILLAALSGTGKGLEVLSAVSHEALKIKLGQALSAYLPLCVEVSLPLRNRLDSLQKEFGLFGEPPSKALDVSMMGNVNVNALQFEDSVMDGPMINSRAGLYVYINAMLVGRPLVDDSMLLNYLSNRYGGHYQALIEETITATFDVLSNASYRNESSRSMFLFRSFLVNKLPSFIAAMLAASMVSLPMELCISHALSRLDPNTFPSFSQMFAMQSNTALSDVRQEFLFACALHKLIPESSIERLLGENPMQTLPVGGPYNKDELVSQINANPERAEQLINEIESMEGNAGAIVGAITDVMHHLCNQKETMTLKNICNSLSRRVQALDVILLFRSARQVLQPLCALLDAWHWDEDQGESQPVYDEFGSILLLVLTFKYRYDLRPCDIGIGGNPSFVLRLLEGGSGSEKLDDLNEKQNKNLGAWINALFIAEGISEETMSSCSPQEFYILVTTLFSQSLGACEAGKLEFDTLKGGFEYLLEPFLLPSLVLALNWLGNHIWETENDPTISLKALQSLVTPSSISGEAKEIHRTVLNITARSLEEQLKDVRARHPSRTDIKPIMDALEPYLSFQRSGSCHRSEFEPWTTHSPGGLLGSMRNTFQSLVLWSTSPDMSMAPQSYTHRQLIAGIRVQGSTRVLAALVEELKLQTEAGNGDLALDIVATLICAPLAESFAVDQNNYSQHPIDPTKEPLPRCPILTLRDALFLLHENVPKISEKDPLRAEVIVRLYRRVNVLMTPPTQVPNLDMNNIIQNMQLGVGGPGQMDLDSSGGPGHDDNINQILDSAAAAVGMDGGQSMGGMGNMGLESSGGGLDTSIDDVLNAADMAVGNPEFLDLDMEGLF |
Length | 1020 |
Position | Tail |
Organism | Aspergillus heteromorphus CBS 117.55 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.006 |
Instability index | 47.19 |
Isoelectric point | 4.93 |
Molecular weight | 111993.28 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 ARBA:ARBA00003669
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP21382
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 262.82| 102| 600| 23| 249| 1
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32- 60 (10.99/167.71) .....................................................................................LQRCPIaeAPLLD..VLLETRLATGIKWDPL
172- 249 (95.26/37.76) SPDAVSLFESLG..ILLAALSGTGkGLEVLSAVSHEaLKIKLgQALSAYLPLCVEVSL...PLRNRLDSLQKEFGLFGEPPSK.................................
789- 899 (156.57/68.63) SPDMSMAPQSYThrQLIAGIRVQG.STRVLAALVEE.LKLQT.EAGNGDLALDIVATLicaPLAESFAVDQNNYSQHPIDPTKepLPRCPI..LTLRDalFLLHENVPKISEKDPL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 118.69| 24| 68| 926| 949| 2
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926- 949 (44.35/23.64) MNNIIQNMQLG..VGGPGQMDLDSSG
963- 988 (36.26/18.08) SAAAAVGMDGGqsMGGMGNMGLESSG
995- 1018 (38.07/19.33) IDDVLNAADMA..VGNPEFLDLDMEG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 131.81| 42| 68| 325| 368| 3
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325- 368 (68.37/47.21) FDVLSNASYRNesSRSMFLFRSFLVNKLP.SFIAAMLA.ASMVSLP
392- 435 (63.44/37.98) FAMQSNTALSD..VRQEFLFACALHKLIPeSSIERLLGeNPMQTLP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 119.76| 38| 600| 114| 171| 4
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114- 171 (54.56/66.11) TDIRVVQDAMlsvstgtTPK.TFSEA.ICIFNAIVDWiqavvawhnghmdASHQTGGLMG
735- 774 (65.20/36.79) TDIKPIMDAL.......EPYlSFQRSgSCHRSEFEPW.............TTHSPGGLLG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 58.23| 17| 374| 14| 30| 6
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14- 30 (29.65/16.28) CLLH...RIDAAEFKSLTRL
372- 391 (28.58/15.46) CISHalsRLDPNTFPSFSQM
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