<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21376

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSDRASSASFRVGPLSPSSPAAGSLKQSQPPSVLSDRIPQTPTSPPLMSVSAQNYATNLASSQTSPNQATSQPANLSSPPSSAPMSHQASQQPTVGTANSFPTPASSVSGHIPNANSFDESEPADKPMGTEPGATTATMNAAAMQQAEHRRTDHDRDLGGMGPAIGVRDFADVNGESDAMDIDREAPALSLHNGPSLESLQKDFSSAFHLCKSSYSATGPDPAVDLISLYGLGPVAHSVARLDSVTGEKINRLRKSYEGKLKGLGLAGRNKPVKQEPGAPGGLRHLTMWPEEEWQNQKVFGKEIKVADMDSALHNLQMKAMKMEPGTVPNNDYWEDVLGHEKPSKHAGSGDAGKKAVGAPPNGIRITQPNGTPAPVTDSERARPSRGRKRHYDENSFVGYGEGYADDDDEGAFYSNSEGIGKKKRKKDHVSKISTPLPDRGGSYGVGMFGIGAR
Length454
PositionHead
OrganismAspergillus heteromorphus CBS 117.55
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
Aromaticity0.05
Grand average of hydropathy-0.734
Instability index48.32
Isoelectric point6.51
Molecular weight47989.55
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364151

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21376
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     188.80|      37|      37|      62|      98|       1
---------------------------------------------------------------------------
   16-   48 (54.13/22.25)	SPSSPAAGSLKQSQPPSV.LS......DRI.PQTPTS.PP..LM
   49-   77 (37.58/13.45)	SV.........SAQNYATNLA.....sSQTSPNQATS.QPANLS
   78-  116 (53.07/21.69)	SPPSSAPMSHQASQQPTVGTA.....nSFPTPASSVSgHIPNAN
  117-  158 (44.02/16.88)	SFDESEPADKPMGTEPGATTAtmnaaaMQQAEHRRTD.HDRDL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.18|      17|      31|     314|     330|       3
---------------------------------------------------------------------------
  314-  330 (32.37/16.43)	HNLQMKAMKMEPGTVPN
  346-  362 (30.81/15.33)	HAGSGDAGKKAVGAPPN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21376 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DDEGAFYSNSEGIGKKKRKKDHVSKISTPLPDRGGSYGVGM
2) HNLQMKAMKMEPGTVPNNDYWEDVLGHEKPSKHAGSGDAGKKAVGAPPNGIRITQPNGTPAPVTDSERARPSRGRKRHYDENSFVGYG
3) MSDRASSASFRVGPLSPSSPAAGSLKQSQPPSVLSDRIPQTPTSPPLMSVSAQNYATNLASSQTSPNQATSQPANLSSPPSSAPMSHQASQQPTVGTANSFPTPASSVSGHIPNANSFDESEPADKPMGTEPGATTATMNAAAMQQAEHRRTDHDRDLGGMGPAIGVRDFADVNGESDAMDIDREAPALSLHNGPSL
408
314
1
448
401
197










Molecular Recognition Features






MoRF SequenceStartStop




1) FRVGPL
10
15