Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MAHGHATSGPRSSAAASTIAIEPPVILSQASRDALQRARRQLWEGDVKSSEPRDDLGDVVERAWLDKEAPAGDRRPLFAKMEKLLAERGGDFSKLHSSQFKRSSTAEQQGDVKRDDNDDDDEHELDLGVAKLGEEGQEKTGDEKQAGGEDAQEEYETSGRDAMTIEEMRQLRSEMLDNLNTARGSLYYSHGLVSLLLNSSKVESGSSGPGGRAGTPSSSAGGVARAGTATSMTGGAQRNAPASQLQLMSNAANLEADLGIEPNVFGASKLQLKKAETEDGDEDDETNEDDEDDDDGNEDLQKELEKQQKQDARIDEADLEDRARDLIECYQAKHDGLASAADILAKGAKALRASSSSEDETKRWAALSEARSGGWGLVPGRPIRVKNGKRELLPDDAMRRRDEAARDAWISYAAPEAATAYQKRALAYYGYSGDGIVFAARPNRTLQVSLVVKDAHGAKPSVWTSKSKASGSADGGEQSEEGIEARLRRAQRELADVELYDALLAECRALSSASLARTTIEDAYSVSLEINPLTDMCFSMVENEDTDTDKVRPADNEQDDAYSPIANVVLSSLRLGLGKKYRQRAGIAKPAKRRAQGKVDDVFRRTAPLLVPVLGLIHYSSFVGKLKTTLDDIVSGRGATYELRTMSGSVYASKVLRSAFEEEDEDEDGGTELEQDALEKVIGAHATIYSASSDEKTAPSRSAVALLTIAYPSRLSLSLPARGVHLPSIDLLSLRDILLDQLSKP |
Length | 745 |
Position | Head |
Organism | Acaromyces ingoldii |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Exobasidiomycetes> Exobasidiales> Cryptobasidiaceae> Acaromyces. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.648 |
Instability index | 54.56 |
Isoelectric point | 4.85 |
Molecular weight | 80560.96 |
Publications | PubMed=29771364 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP21330 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 395.80| 157| 172| 69| 240| 1 --------------------------------------------------------------------------- 4- 57 (42.68/14.46) ...........................................................................................GHATSgPRSSAAASTIAIEPPVILSQASRDA..................................LQRARRQLWEGD....VKSSEPRDDLG............ 77- 134 (30.44/30.43) ................................................................................................................................LFAKMEKLLAERGGD...F..SKLhssQFKRSSTAEQQGD....VKRDDNDDDDEHElDLGvaKLGE 135- 305 (240.47/124.22) EGQEKTG..DEKQAGGED.AQ...EEY.E......TSGRDAMTIEEMRQLRSEMLDNLNTARGSLYYSHGLVSLLLNsSKVESGSSG..PGGRAGT.PSSSAGGVARAGTATSMTGGAQRNApasqlqLMSNAANLEADLGIEpnvFgaSKL...QLKKAET..EDGDeddeTNEDDEDDDDGNE.DLQ..KELE 306- 380 (39.37/10.55) KQQKQDAriDE..ADLEDrARdliECY.QakhdglASAADILA.KGAKALRASSSSEDETKR........WAAL....SEARSGGWGlvPG........................................................................................................ 474- 531 (42.83/12.19) DGGEQSE..EGIEARLRR.AQ...RELaD......VELYDAL.LAECRALSSASL.....ARTTIEDAYS.VSLEIN...................................................................................................................... --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) AAASTIAIEPPVILSQASRDALQRARRQLWEGDVK 2) EPRDDLGDVVERAWLDKEA 3) LFAKMEKLLAER 4) MAHGHA | 14 51 77 1 | 48 69 88 6 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab