<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21329

Description Mediator of RNA polymerase II transcription subunit 11
SequenceMTASSSNPASQPAIAPQLEEKIEAVRSEKLLADAERRRIAVRAKNEKARRMVRRLESCDGNIADLLSQASDCLRTLVDATAHESAYAAHADVRSYNESEDELRKTFELRAQQWFATLHEVQLGLRSAVRNLRKAQMEPTQRDISAAAGGPASSSSSSSSVPASPALNHVGKAERGHGLGIHTTEASLSESSSSSRSSLLDAFVDVGLKGPDLIAEDKKATKSSLLHDTKLSLSALRMQEHSWQQLAEALGEIAERRQAGSRSSKGSQRATSLPKMSQGQKERVRSLANDLVAAKDSQDSRLMSALLQMGIGPTDDVGTMADSMRADSGRA
Length330
PositionHead
OrganismAcaromyces ingoldii
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Exobasidiomycetes> Exobasidiales> Cryptobasidiaceae> Acaromyces.
Aromaticity0.02
Grand average of hydropathy-0.565
Instability index67.23
Isoelectric point8.51
Molecular weight35486.22
Publications
PubMed=29771364

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364147
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP21329
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.19|      33|      35|     152|     186|       1
---------------------------------------------------------------------------
    4-   30 (27.90/ 9.63)	.SSSNPAS.QPA......iAPQL.EEKIEAVRSEKL........
  152-  186 (52.96/29.43)	SSSSSSSS.VPA.......SPAL.NHVGKAERGHGLgiHTTEAS
  190-  231 (39.33/16.64)	SSSSSRSSlLDAfvdvglkGPDLiAEDKKATKSSLL..HDTKLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.86|      19|      26|      56|      81|       3
---------------------------------------------------------------------------
   56-   74 (34.48/22.64)	ESCDGNIADLLS..QASDCLR
   83-  103 (27.38/ 7.21)	ESAYAAHADVRSynESEDELR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.95|      30|      30|     263|     292|       4
---------------------------------------------------------------------------
  263-  292 (48.69/30.52)	SKGSQRATSLPKMSQGQKERVRSLANDLVA
  296-  325 (51.26/32.49)	SQDSRLMSALLQMGIGPTDDVGTMADSMRA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21329 with Med11 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LMSALLQMGIGPTDDVGTMADSMRADSGRA
2) QQLAEALGEIAERRQAGSRSSKGSQRATSLPKMSQGQKERVRSLANDLVA
3) VRNLRKAQMEPTQRDISAAAGGPASSSSSSSSVPASPALNHVGKAERGHGLGIHTTEASLSESS
301
243
128
330
292
191










Molecular Recognition Features






MoRF SequenceStartStop




NANANA