<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21310

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMLAELNYAQESIYSAHCAISLILLSRPTQISSGSSSTGLGRQGSERGTPLPREREGTATSTRAGAGAGAAAAAGWAGRGVSAAQPGTAMALFEETGLEAEHVSVELLGSFQPDASAQAEDASQGSAYSSSDEGAERSSQSKDRKGVLDKKEERGAEEQEGEEADNLYSAKSNARYLRENDDKLSKEQMEDRTKSLVISAQAARDGILGAIGILRRGARELDEVCAQKASPTSGSTLTKGLGEGSNMRREASEATYADRRGTLNAAEREANRWECLARAKSCDWTLSGVANADLDVLLQDEEEAPEREGRAALTTLIEADRNRGARDAWIGWAITEGECFSLFGHSLPRPHADYKQRSLARVHSAEPRSPSAETAASDAQDKEGMSEKLEQNEESAGHVPAPVSFVYRPNKRLQVSFELSCTGGSLPEQLEARRGNADGTAEVRHMHVDGQGKRRTLFVSSDANVPARWQRSKAGDEASRTRRELNEAQLELADEELFGNLVSEARALSNRGEANVKISTSSLTIFVSNQVSMLIELIPTRSPQSFDKPTSPTMEDDGAPKGDEMQNVQRVASAMPDALLGFLRLGLVGRYKDRACGSSAFGSSRASQGKIEMLHPLLSVLRLLKLRSGVFERVQTLMENLESRMAKSGRVRLEQSAVTFKAFGKKNSKAARAERAVGIERAGWVSRVFGGRALGAFTSLQSHLALHVDDE
Length710
PositionHead
OrganismCeraceosorus guamensis
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Exobasidiomycetes> Ceraceosorales> Ceraceosoraceae> Ceraceosorus.
Aromaticity0.05
Grand average of hydropathy-0.577
Instability index49.77
Isoelectric point5.74
Molecular weight76559.10
Publications
PubMed=29771364

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364140
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP21310
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     804.83|     213|     471|       4|     216|       1
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    4-  216 (341.94/178.08)	ELNYAQ.....ESIYSAHCAISLILLSR...PTQISSGSSSTGLGRQGSE......RGTPLPREREGTATSTRAGAGAGAAAAAGWAGRGVSAAQPGTAMALFEETGLEAEHVSVELLGSFQPDASAQAEDASQG.SAYSSSD...............................EGAER.SSQSK.....DRKGVLD.KKEERGAEEQEGE.EADNLYSAKSNARY.....LRENDDKLSKEQMEDRTKSLVISAQAARDGILGAIGILRRG
  242-  451 (207.98/105.24)	.......................................EGSNMRREASEatyadrRGTLNAAEREANRWECLA.....RAKSCDWTLSGVANADLDVLLQDEEEAPEREGRAALTTL..IEADRNRGARDAWIG.WAITEGEcfslfghslprphadykqrslarvhsaeprsPSAETaASDAQ.....DKEGMSE.KLEQ..NEESAGHvPAPVSFVYRPNKRLqvsfeLSCTGGSL.PEQLEARRGNADGTAEVRHMHVDG......QG
  483-  682 (254.91/130.76)	ELNEAQleladEELFGNLVSEARALSNRgeaNVKISTSSLTIFVSNQVSM......LIELIP.........TRSPQSFDKPTSPTMEDDG...APKGDEMQNVQRV...ASAMPDALLGFLRLGLVGRYKDRACGsSAFGSS....................................R.ASQGKiemlhPLLSVLRlLKLRSGVFERVQT.LMENLESRMAKSGR.....VRLEQSAVTFKAFGKKNSK...AARAER.....AVGIERAG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21310 with Med17 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DEVCAQKASPTSGSTLTKGLGEGSNMRREASEATYADRRGTL
2) DYKQRSLARVHSAEPRSPSAETAASDAQDKEGMSEKLEQNEESAGHVPAPVS
3) LPEQLEARRGNADGTAEVRHMHVDGQGKRRTL
4) RSPQSFDKPTSPTMEDDGAPKGDEMQNVQR
5) SGSSSTGLGRQGSERGTPLPREREGTATSTRAGAGAGAA
6) VSVELLGSFQPDASAQAEDASQGSAYSSSDEGAERSSQSKDRKGVLDKKEERGAEEQEGEEADNLYSAKSNARYLRENDDKLSKEQMEDRTKSLVI
221
352
425
540
32
102
262
403
456
569
70
197










Molecular Recognition Features






MoRF SequenceStartStop




1) ATSTRAGAGAGAAAAAGWAG
58
77