Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MSQRFGASVATPAASRLAESSQNNNAFTLPPSITTDAHISLVQLPIPSDSVIHWQRHTTSSSNLQQTDHAHHRADPSIVQNSVHDLMQIAQEQAQRNASSRTELKSALLNDIFWTCEERQQKGSYVSSGNNADNDSVSQGPASIWTFQVEHVNAAESSNAIHKGRNTTGGSLDRMKKVHEKLTQSGAAQTEGTLSLQNLYKKGAQDEQSLVPNNEDDHQPLSQFIKALEEFLLLRWVWTRQSERHATSKRQMQPQKLNPKTESTIDGKVKASTDEEEEGALGDDGSEEVKEGQRGQESSNLWSGNQLARDKPVVRLGKGVMVYDRPNKTQRGLLSFDSESTNMPLQMSLRCFADDTGHIFLETWPCDNSASQLVKENDANPGDTLLLAPLMIKARFISFVGPVAQISDNVTVRSSREALFDLLQLNAVDTSFLVDEWISCSYQGRVFLWPAQLCLLHKLSSPLPYAKMPSLVESTLHDVTAKARRCVRETLGLSVTPDRELTASSQEEEDDAMEEEDDDEQDEQGMDTRNSGSPAKIGQTLDTADAKGASDRSALDASKAAATSMDIKPNDTVDSLSLPAYQSGTRRNSAVAMDSNSKDEEMDLWGSFGFVGQEDSQLPPMPRSRDGFDDTGFGLVTEDDFSFFDDGAADFSAFTNDALDVGEMNIHQPDGDATITEMPMEEDTEVLPEAIHVEDEQGTQQIDQDHEESTGTGSSAIDPPSLPGFTPGSFSESSPAVGGMSVKTPRTPFSPNQELADTAITIEGEHGSLENGMYGHHQYNHHHVMPNDHSNEEYESMNNYDSSMGPPEVRFMPNQKRRQNWANKGQRDITSKYEQGKFAMPFVPLRKKQGDEESSDQQHQPQRQTGRSDQESALLAPTRSRLGHRTTVNGRRVSFSRTGAHPHSGLIGALKGRLGVLRGDEEMSEATGDGTMSERSSLMEEDSADDESVSSDQTSEEDEALTEQRTEMLQSSIHFLRFANYSNAPSFDDHTQDELVELQPSTNVEPAEWNDLVHHLIENPQLRLQIGQSLGQIEYAGSVSRYDSQHLFTLLQGHESDCTLGTCMGGEKSNQNANKSSLLQVMEPSNVLVGCQGSVTNVAPSALHYWDKLGLTAVGGQKDVAAFALHTNDVNIAMQGEIRNWLDSMGKVFRENGLGSHTMSEHGLLDIGTVSRSKTLADTLNLMAKDAEQWSDTVDSLVSRVVGALKKHNFVVMYAIGSFHVPGQIQSFVRLQRDLRSSASLRYGIPGDSIVVRPCSWESVRLTSSISRDASTNSLRRMAMSIYDSLQVTVDVQYNREQYLPKFSAVPTAVQYPSFSILPASFGNNVGSAFKLDWYFKSVDIFERGTLLHVAYHLAPSAGQPSMLAIIDERGQGYTATAWRRTGSMQDEIQRIWNITTEFTMRSRNMWKIVLCKDRAIGMAEVRMWSKILKDRTALENANALEVILSCSELDRVLSLVLPLQDLNELECRRQAAVETIPNSKSGGKYIDASIWKYALYPQRRMALRNSVLGKDDGKDDMFSLPILPLRSSLTMTIPQSWNSTTTLSSNENGVNSKAWSRSAPHHLWIHILQVFKLDPNEESMQATQNVESSTSSSTPTPASIAHSDAQSTGSGVEQKNTPSDPFGIESRLERITKSFQELELIARERAMLPMDDPTTIHLPWHLAILQNLLNLSSAVFIGN |
Length | 1680 |
Position | Kinase |
Organism | Meira miltonrushii |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Exobasidiomycetes> Exobasidiales> Brachybasidiaceae> Meira. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.574 |
Instability index | 53.84 |
Isoelectric point | 5.02 |
Molecular weight | 185736.86 |
Publications | PubMed=29771364 |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP21295 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 293.44| 72| 173| 497| 568| 1 --------------------------------------------------------------------------- 497- 568 (112.26/56.62) PDRE..LTASSQEEEDDAMEE..ED.DDEQDEQG....MDTRNSGSPAKIGQTLDTADAKG.....ASDRSALDASKAAATSMDIK 579- 654 (81.57/39.05) PAYQ....SGTRRNSAVAMDS..NSkDEEMDLWGsfgfVGQEDSQLP.PMPRSRDGFDDTGfglvtEDDFSFFDDGAADFSAF... 669- 743 (99.62/49.39) PDGDatITEMPMEEDTEVLPEaiHV.EDEQGTQQ....IDQDHEESTGTGSSAIDPPSLPG.....FTPGS.FSESSPAVGGMSVK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 540.18| 172| 644| 177| 424| 2 --------------------------------------------------------------------------- 177- 367 (260.55/204.52) KVHEKLTqSGAAQTEGTLSLQNLYKKGAqDEQSlvpnNEDDHQPLSQFIKALEEFLLLRWVWTRQSERHATSKRQMQPQKLNPKTESTIDGKVKAST.....DEEEEGALGdDG..SEEVKEGQRGQESSNLWSGNQLARDKPVVRLGKGVMVydrpnKTQRGLLSFDSEStNMPlqmslrCFADDTGHIFLETWPCD 824- 1002 (279.63/124.42) KGQRDIT.SKYEQGKFAMPFVPLRKKQG.DEES....SDQQHQPQRQTGRSDQESALLAPTRSRLGHRTTVNGRRVSFSRTGAHPHSGLIGALKGRLgvlrgDEEMSEATG.DGtmSERSSLMEEDSADDESVSSDQTSEEDEALTEQRTEML.....QSSIHFLRFANYS.NAP......SFDDHTQDELVELQPST --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 63.77| 20| 620| 397| 424| 3 --------------------------------------------------------------------------- 397- 424 (27.58/32.69) ISFVGPVAqisdnvtvRSSREALFDLLQ 1033- 1052 (36.18/22.41) IEYAGSVS........RYDSQHLFTLLQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 175.66| 54| 890| 426| 485| 5 --------------------------------------------------------------------------- 426- 485 (81.70/71.76) NAVDTSFLVDeWISCSYQgrVFlwpAQLCLLHKLSSPLPYAKMPSL...VESTLHDVTAKARR 1324- 1380 (93.95/60.32) NNVGSAFKLD.WYFKSVD..IF...ERGTLLHVAYHLAPSAGQPSMlaiIDERGQGYTATAWR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 47.60| 12| 279| 1254| 1265| 6 --------------------------------------------------------------------------- 1254- 1265 (24.17/11.08) PCSWESVRLTSS 1535- 1546 (23.43/10.54) PQSWNSTTTLSS --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) EDDFSFF 2) FVPLR 3) QGKFAM | 638 842 835 | 644 846 840 |
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